View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6395_low_10 (Length: 359)
Name: NF6395_low_10
Description: NF6395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6395_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 24 - 349
Target Start/End: Original strand, 34085842 - 34086163
Alignment:
| Q |
24 |
tctctctctttactgttgatttccgattatggtgatagcgtcttccttcaaaaaatttggtttgtctcattctttttgcttaaattgttcttctaatttg |
123 |
Q |
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| T |
34085842 |
tctctctctttactgttgatttccgattatggtgataccgtcttccttcaaaaaatttggtttgtctcattctttttgcttaaattgttcttctaatttg |
34085941 |
T |
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| Q |
124 |
tcttttatagacagtagaagatgtattgtgtccagagatccagaatcctttgtcttctattggtcgatatccgacaggaaattcaannnnnnngtttatt |
223 |
Q |
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| T |
34085942 |
tcttttatagacagtagaagatgtattgtgtccagagatccagaatcctttgtcttctattggtcgatatccgacaggaaattcaatttttttgtttatt |
34086041 |
T |
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| Q |
224 |
tgtggtgggtgttgtcagtggtaaatagtaggtttgtttcaatcttttagggattttgtggattcatcgcagatatcgtcgaagggagggtataatttta |
323 |
Q |
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| T |
34086042 |
tgt----ggtgttgtcagtggtaaatagtaggtttgtttcaatcttttagggattttgtggattcatcgcagttatcgtcgaagggagggtataatttta |
34086137 |
T |
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| Q |
324 |
cttgcaatctctattttactcctttg |
349 |
Q |
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| T |
34086138 |
cttgcaatctctattttacccctttg |
34086163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 39076944 - 39076993
Alignment:
| Q |
247 |
aatagtaggtttgtttcaatcttttagggattttgtggattcatcgcaga |
296 |
Q |
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| T |
39076944 |
aatagtaggtttgtttcaaacttttaaagatttggtggattcatcgcaga |
39076993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 39076779 - 39076825
Alignment:
| Q |
82 |
ggtttgtctcattctttttgcttaaattgttcttctaatttgtctttt |
129 |
Q |
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| T |
39076779 |
ggtttgtctcattctttttgcttaaa-gggtcttctaatttgtctttt |
39076825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 39076701 - 39076754
Alignment:
| Q |
19 |
aatagtctctctctttactgttgatttccgattatggtgatagcgtcttccttc |
72 |
Q |
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| T |
39076701 |
aatagtctctctctttactgttgaatttcatttttggtgatagcgccttccttc |
39076754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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