View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6395_low_13 (Length: 264)
Name: NF6395_low_13
Description: NF6395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6395_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 8 - 246
Target Start/End: Complemental strand, 40767676 - 40767438
Alignment:
| Q |
8 |
tccaatgcttctagttttgatctcattacaccatcaacttcaattgaatccatgcttcgattttccattatcaaatctgatccaaaactggactggtcag |
107 |
Q |
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| T |
40767676 |
tccaatgcttctagttttgatctcattacaccatcaacttcaattgaatccatgcttcgattttccattatcaaatctgatccaaaactggactgatcag |
40767577 |
T |
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| Q |
108 |
caccacgttgcctttttggcatgaaacttgtagagacgttggaactagatggttctatcagttcttctgtattcgagtcatggaaatacttctcgtaact |
207 |
Q |
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| T |
40767576 |
caccacgttgccttgttggcatgaaacttgtagagacgttggaactagatggttctatcagttcttctgtattcgagtcatggaaatacttctcgtaact |
40767477 |
T |
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| Q |
208 |
ctcgctcgagtaagcatctgtcatatacatgcttctatg |
246 |
Q |
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| T |
40767476 |
ctcgctcgagtaagcatctgtcatatacatgcttctatg |
40767438 |
T |
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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 246
Target Start/End: Original strand, 10094324 - 10094421
Alignment:
| Q |
149 |
gaactagatggttctatcagttcttctgtattcgagtcatggaaatacttctcgtaactctcgctcgagtaagcatctgtcatatacatgcttctatg |
246 |
Q |
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|||||||| |||||||||||||| |||||| || ||| |||| ||||| ||||||||||| |||||||||| ||| |||| |||||||||||||| |
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| T |
10094324 |
gaactagacggttctatcagttcctctgtaggtgaatcaaggaagtacttttcgtaactctcactcgagtaagaatcattcatgtacatgcttctatg |
10094421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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