View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6395_low_4 (Length: 639)
Name: NF6395_low_4
Description: NF6395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6395_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 600; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 1 - 616
Target Start/End: Complemental strand, 7832664 - 7832049
Alignment:
| Q |
1 |
aggaacaaactaccttctgtaccaagtaatttcttcaagaagctcccttctagaacagaaagcttactgtaaatttgttttacatagttttattgatctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7832664 |
aggaacaaactaccttctgtaccaagtaatttcttcaagaagctcccttctagaacagaaagcttactgtaaatttgttttacatagttttattgatctg |
7832565 |
T |
|
| Q |
101 |
tgtgttgcatacacatattaacaattttcaatttattcatttcctgcttttatcttcttgcagattatgactttaatggaaatttataatgtactaacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7832564 |
tgtgttgcatacacatattaacaattttcaatttattcatttcctgcttttatcttcttgcaaattatgactttaatggaaatttataatgtactaacta |
7832465 |
T |
|
| Q |
201 |
gcaaaaaatatctcttttcaccatctttgcccctcaaatgctctatcaaatcattccagggtttgagggtatattcaaaccctgaagcacccatgtgagg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7832464 |
gcaaaaaatatctcttttcaccatctttgcccctcaaatgctctatcaaatcattgcagggtttgagggtatattcaaaccctgaagcacccatgtaagg |
7832365 |
T |
|
| Q |
301 |
ggtacgattcaatacaatttcaactactcctaaggatgagtcttacaacaatttcatttaaatcaattattattcaatcacaacagcagcagcagcatcc |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7832364 |
ggtacgattcaatacaatttcaactactcctaaggatgagtcttacaacaatttcatttaaatcaattattattcaatcacaacagcagcagcagcatcc |
7832265 |
T |
|
| Q |
401 |
aatccacataataagacttttcttgctcaaacccatcttattctgtttttgatttgtgctgtgaatttgacctcccaactcacgctgtttctgattctga |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7832264 |
aatccacataataagacttttcttgctcaaactcatcttattctgtttttgatttgtgctgtgaatttgacctcccaactcacgctgtttctgattctga |
7832165 |
T |
|
| Q |
501 |
gcattgtgctccattctaatattaccacacttagcatcaacctccaccctcagcttcccataagttgtccttttgaaattacatcccaaccttcccaatc |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7832164 |
gcattgtgctccattctaatattaccacacttagcatcaacctccaccctcagcttcccataagttgtccttttgaaattacatcccaaccttcccaatc |
7832065 |
T |
|
| Q |
601 |
tttcctgtcctttgat |
616 |
Q |
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|||||||||||||||| |
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| T |
7832064 |
tttcctgtcctttgat |
7832049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 7914843 - 7914765
Alignment:
| Q |
1 |
aggaacaaactaccttctgtaccaagtaatttcttcaagaagctcccttctagaacagaaagcttactgtaaatttgtt |
79 |
Q |
| |
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|||||||||||||||||||| || |||||||||||||||| ||||||| |||||||||| || ||||||||||| |||| |
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| T |
7914843 |
aggaacaaactaccttctgttccgagtaatttcttcaagaggctccctgctagaacagatagtttactgtaaatctgtt |
7914765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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