View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6395_low_5 (Length: 583)
Name: NF6395_low_5
Description: NF6395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6395_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 488 - 555
Target Start/End: Complemental strand, 14169230 - 14169163
Alignment:
| Q |
488 |
ccaaaaaacaccggggatttaccataagtgtgctttctattaatgtattttgacacaaatatacacaa |
555 |
Q |
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| T |
14169230 |
ccaaaaaacaccggggatttaccataagtgtgctttctattaatgtattttgacacaaaaatacacaa |
14169163 |
T |
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Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 488 - 555
Target Start/End: Complemental strand, 14169415 - 14169348
Alignment:
| Q |
488 |
ccaaaaaacaccggggatttaccataagtgtgctttctattaatgtattttgacacaaatatacacaa |
555 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14169415 |
ccaaaaaacaccggggatttaccataagtgtgctttctattaatgtattttgacacaaaaatacacaa |
14169348 |
T |
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