View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6396_low_1 (Length: 639)
Name: NF6396_low_1
Description: NF6396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6396_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 604; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 1 - 620
Target Start/End: Complemental strand, 45685014 - 45684395
Alignment:
| Q |
1 |
gaaaaagattgaaactcacccaatgcctaatgagctacaaactagttaacaatgtccataattttgttacatgcttaatatatctaataggcttacaagc |
100 |
Q |
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| T |
45685014 |
gaaaaagattgaaactcacccaatgcctaatgagctacaaactagttaacaatgtccataattttgttacatgcttaatatatctaataggcttacaagc |
45684915 |
T |
|
| Q |
101 |
tatttgtttattctgccaaactccatggtccttgctgtatgcattctttcttttatttatttagaatccttgaattatcaggatgtgacagtggcttata |
200 |
Q |
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| T |
45684914 |
tatttgtttattctgccaaactccatggtccttgctgtatgcattctttcttttatttatttagaatccttgaattatcaggacgtgacagtggcttata |
45684815 |
T |
|
| Q |
201 |
tcttggaattgtagatgactgtagttgaggcatatgctggtgggagggagaaattaaatccaccagatgactcgtcaaaattgcatccagaagttttatc |
300 |
Q |
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| T |
45684814 |
tcttggaattgtagatgactgtagttgaggcatatgctggtgggagggagaaattaaatccaccagatgactcgtcaaaattgcatccagaagttttatc |
45684715 |
T |
|
| Q |
301 |
tctgataaatgaaggcatagcacaaaatacaacaggcaatattttcattcctaaggtatgtcttgcctttgtacttaattttaacaactattatgttgtg |
400 |
Q |
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| T |
45684714 |
tctgataaatgaaggcatagcacaaaatacaacaggcaatattttcattcctaaggtatgtcttgcctttgtacttaattttaacaactattatgttgtg |
45684615 |
T |
|
| Q |
401 |
atatttggcacttgattaccccaattaaggatctcgttgtagtccaacactaacagtttcttttggtcggttggatttattgtttgagaatcttgattat |
500 |
Q |
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| T |
45684614 |
atatttggcacttgattaccccaattaaggatctcgttgtagtccaacactaacagtttcttttggtcggttggatttattatttgagaatcttgattat |
45684515 |
T |
|
| Q |
501 |
tgtgattcttatttcatgaatgtttgcattatagaattattagcattgctatctatgactgtagcgtacttgctttggcaggatggtggagagacagaga |
600 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45684514 |
tgtgattcttatttcattaatgtttgcattatagaattattagcatttctatctatgactgtagcgtacttgctttggcaggatggtggagagacagaga |
45684415 |
T |
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| Q |
601 |
tttcaggatctcctacagag |
620 |
Q |
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| T |
45684414 |
tttcaggatctcctacagag |
45684395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 255 - 330
Target Start/End: Original strand, 1441698 - 1441773
Alignment:
| Q |
255 |
taaatccaccagatgactcgtcaaaattgcatccagaagttttatctctgataaatgaaggcatagcacaaaatac |
330 |
Q |
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||||||||||||||||||| ||||| || |||||||||| |||||||||||||||||| |||| ||||| ||||| |
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| T |
1441698 |
taaatccaccagatgactcttcaaagttccatccagaagcattatctctgataaatgaaagcattgcacagaatac |
1441773 |
T |
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