View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6396_low_10 (Length: 248)
Name: NF6396_low_10
Description: NF6396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6396_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 37227592 - 37227357
Alignment:
| Q |
1 |
cgagtgagatgaacatgccaaatcaggtaaaacctcaatatcatttccatttggtgattgcgtagcttttgaacctaacggcgaaacaccatccaaatcc |
100 |
Q |
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| T |
37227592 |
cgagttagctgaacatgccaaatcaggtaaaacctcaatatcatttccatttggtgattgcgtagcttttgaacctaacagcgaaacaccatccaaatcc |
37227493 |
T |
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| Q |
101 |
ttacttccctgtgccaaaattgcaaccaacttaggagagagtcttccataatcatgggtttttcttccttgttccccttcaatactcatagcatctgaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37227492 |
ttacttccctgtgccaaaattgcaaccaacttaggagagagtcttccataatcatgggtttttcttccttgttccccttcaatactcatagcatctgaat |
37227393 |
T |
|
| Q |
201 |
ccccgctagcactcgccaacaccggcgactgaggcg |
236 |
Q |
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|||||||||||||||||| ||||||||||||||||| |
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| T |
37227392 |
ccccgctagcactcgccaccaccggcgactgaggcg |
37227357 |
T |
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