View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6396_low_12 (Length: 240)

Name: NF6396_low_12
Description: NF6396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6396_low_12
NF6396_low_12
[»] chr4 (15 HSPs)
chr4 (18-240)||(6748519-6748741)
chr4 (85-231)||(6503817-6503963)
chr4 (84-226)||(6550689-6550831)
chr4 (106-226)||(6738179-6738299)
chr4 (83-226)||(6627075-6627218)
chr4 (65-207)||(6811523-6811665)
chr4 (82-207)||(6792068-6792193)
chr4 (82-226)||(6502563-6502707)
chr4 (82-221)||(6522872-6523011)
chr4 (82-226)||(6832025-6832169)
chr4 (83-207)||(6593426-6593550)
chr4 (85-226)||(6541725-6541866)
chr4 (82-207)||(6646747-6646872)
chr4 (82-207)||(6769229-6769354)
chr4 (98-159)||(7890930-7890991)
[»] scaffold0729 (1 HSPs)
scaffold0729 (82-207)||(6436-6561)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 6748741 - 6748519
Alignment:
Q  18 gtaaagaaactagagtagaattttcatctgatgttccctggacatattctagaaagcatgtatcctcaaaatagggaccaatttgatcataaatggcttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6748741 gtaaagaaactagagtagaattttcatctgatgttccctggacatattctagaaagcatgtatcctcaaaatagggaccaatttgatcataaatggcttt 6748642  T
Q  118 agcaatagctgatttaccaacccctgccatcccccatatcccgagtaggagaggagattttgattgttttaatagttgaatcacatcttgggcacgagaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  6748641 agcaatagctgatttaccaacccctgccatcccccatatcccgagtaggagaggggatttcgattgttttaatagttgaatcacatcttgggcacgagaa 6748542  T
Q  218 tttatgctccctctatagttatt 240  Q
    |||||||||||||||||||||||    
T  6748541 tttatgctccctctatagttatt 6748519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 85 - 231
Target Start/End: Original strand, 6503817 - 6503963
Alignment:
Q  85 aaaatagggaccaatttgatcataaatggctttagcaatagctgatttaccaacccctgccatcccccatatcccgagtaggagaggagattttgattgt 184  Q
    |||| |||||||||| |||| |||||||||||  ||||| | ||||||||||| ||||| ||||||||||||||| || |||||||||||||||||||||    
T  6503817 aaaaaagggaccaatctgattataaatggcttcggcaatggttgatttaccaatccctgtcatcccccatatccccagcaggagaggagattttgattgt 6503916  T
Q  185 tttaatagttgaatcacatcttgggcacgagaatttatgctccctct 231  Q
    || |||||||||||||||||||| |||||||||| ||||||| ||||    
T  6503917 ttcaatagttgaatcacatcttgtgcacgagaatgtatgctctctct 6503963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 84 - 226
Target Start/End: Original strand, 6550689 - 6550831
Alignment:
Q  84 caaaatagggaccaatttgatcataaatggctttagcaatagctgatttaccaacccctgccatcccccatatcccgagtaggagaggagattttgattg 183  Q
    ||||||||||||||||||||| |||||||||||  ||||| | || |||||||| ||||||||||||||| ||||| |  || |||||||||||||||||    
T  6550689 caaaatagggaccaatttgatgataaatggcttgggcaatggttgttttaccaatccctgccatcccccaaatccctataagtagaggagattttgattg 6550788  T
Q  184 ttttaatagttgaatcacatcttgggcacgagaatttatgctc 226  Q
    ||| ||||||||||||||||||||  |||||||||||||||||    
T  6550789 tttcaatagttgaatcacatcttgcacacgagaatttatgctc 6550831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 106 - 226
Target Start/End: Complemental strand, 6738299 - 6738179
Alignment:
Q  106 ataaatggctttagcaatagctgatttaccaacccctgccatcccccatatcccgagtaggagaggagattttgattgttttaatagttgaatcacatct 205  Q
    ||||||||| || ||||| | ||||||||||| ||||| ||||||||||||||| || ||||||| ||||||||||||||| ||||||||||||||||||    
T  6738299 ataaatggcgttggcaatggttgatttaccaatccctgtcatcccccatatccctagcaggagagaagattttgattgtttcaatagttgaatcacatct 6738200  T
Q  206 tgggcacgagaatttatgctc 226  Q
    ||||||||||||| |||||||    
T  6738199 tgggcacgagaatgtatgctc 6738179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 83 - 226
Target Start/End: Original strand, 6627075 - 6627218
Alignment:
Q  83 tcaaaatagggaccaatttgatcataaatggctttagcaatagctgatttaccaacccctgccatcccccatatcccgagtaggagaggagattttgatt 182  Q
    |||||||||||||||| |||||||||||| ||||  ||||| | ||||||||||| |||| |||||||||||||||| | ||| |||||||| |||||||    
T  6627075 tcaaaatagggaccaacttgatcataaatagcttgggcaatggttgatttaccaatccctcccatcccccatatccctattagaagaggagagtttgatt 6627174  T
Q  183 gttttaatagttgaatcacatcttgggcacgagaatttatgctc 226  Q
    |||| ||||||||||||||||||||  ||| ||| |||||||||    
T  6627175 gtttcaatagttgaatcacatcttgcacaccagattttatgctc 6627218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 207
Target Start/End: Complemental strand, 6811665 - 6811523
Alignment:
Q  65 tctagaaagcatgtatcctcaaaatagggaccaatttgatcataaatggctttagcaatagctgatttaccaacccctgccatcccccatatcccgagta 164  Q
    |||||||| ||| | || |||||||| |||| ||| |||||||||||||| |  ||||| ||||||||||||| ||||| ||||||||||||||| ||||    
T  6811665 tctagaaaacatttgtcttcaaaataaggactaatctgatcataaatggcctcggcaatggctgatttaccaatccctgtcatcccccatatccctagta 6811566  T
Q  165 ggagaggagattttgattgttttaatagttgaatcacatcttg 207  Q
    |||||||| ||||||||||||| ||| ||||||||||||||||    
T  6811565 ggagaggacattttgattgtttcaattgttgaatcacatcttg 6811523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 82 - 207
Target Start/End: Complemental strand, 6792193 - 6792068
Alignment:
Q  82 ctcaaaatagggaccaatttgatcataaatggctttagcaatagctgatttaccaacccctgccatcccccatatcccgagtaggagaggagattttgat 181  Q
    |||||||||  ||||||||||||||||||||||||| ||||| | ||||||||||| ||||| ||||||||||||||| ||||||| ||||  |||||||    
T  6792193 ctcaaaataaagaccaatttgatcataaatggctttggcaatggttgatttaccaatccctgtcatcccccatatccctagtaggataggactttttgat 6792094  T
Q  182 tgttttaatagttgaatcacatcttg 207  Q
     |||| ||||||||||||||||||||    
T  6792093 cgtttcaatagttgaatcacatcttg 6792068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 82 - 226
Target Start/End: Original strand, 6502563 - 6502707
Alignment:
Q  82 ctcaaaatagggaccaatttgatcataaatggctttagcaatagctgatttaccaacccctgccatcccccatatcccgagtaggagaggagattttgat 181  Q
    |||||||||||||||||| |||| | |||||||||  ||||| | |||||||| || ||||| ||||||||| ||||| || |||||||||||| |||||    
T  6502563 ctcaaaatagggaccaatctgattaaaaatggcttgggcaatggttgatttactaatccctgacatcccccacatccctagcaggagaggagatcttgat 6502662  T
Q  182 tgttttaatagttgaatcacatcttgggcacgagaatttatgctc 226  Q
    ||||| |||||||||||||||||||| ||| |||||| |||||||    
T  6502663 tgtttcaatagttgaatcacatcttgcgcatgagaatgtatgctc 6502707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 82 - 221
Target Start/End: Original strand, 6522872 - 6523011
Alignment:
Q  82 ctcaaaatagggaccaatttgatcataaatggctttagcaatagctgatttaccaacccctgccatcccccatatcccgagtaggagaggagattttgat 181  Q
    ||||||||| ||||||| ||||||||||||||| || ||||| | ||||||||||| |||| ||||||||||||| || | || ||||||||||||||||    
T  6522872 ctcaaaataaggaccaacttgatcataaatggccttggcaatggttgatttaccaatccctaccatcccccatatgcctattacgagaggagattttgat 6522971  T
Q  182 tgttttaatagttgaatcacatcttgggcacgagaattta 221  Q
    ||||| ||||||||||||||||| || |||| ||| ||||    
T  6522972 tgtttcaatagttgaatcacatcatgcgcaccagatttta 6523011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 82 - 226
Target Start/End: Complemental strand, 6832169 - 6832025
Alignment:
Q  82 ctcaaaatagggaccaatttgatcataaatggctttagcaatagctgatttaccaacccctgccatcccccatatcccgagtaggagaggagattttgat 181  Q
    ||||||||||||||||||||||| | | ||||| |   ||||   ||||||||||| ||||| ||||||||||||||| |||| |||||||||||||||     
T  6832169 ctcaaaatagggaccaatttgattacatatggcatggacaatgcttgatttaccaatccctggcatcccccatatccctagtatgagaggagattttgac 6832070  T
Q  182 tgttttaatagttgaatcacatcttgggcacgagaatttatgctc 226  Q
    ||||| |||||||||||||||||||| || |  ||||||||||||    
T  6832069 tgtttcaatagttgaatcacatcttgcgcccctgaatttatgctc 6832025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 6593426 - 6593550
Alignment:
Q  83 tcaaaatagggaccaatttgatcataaatggctttagcaatagctgatttaccaacccctgccatcccccatatcccgagtaggagaggagattttgatt 182  Q
    ||||||||  ||||||||||||| ||||||||||  ||||| | ||||||||||| ||||| ||||||||||||||| | || |||||||  ||||||||    
T  6593426 tcaaaataaagaccaatttgatcgtaaatggcttgggcaatggttgatttaccaatccctgtcatcccccatatccctattatgagaggactttttgatt 6593525  T
Q  183 gttttaatagttgaatcacatcttg 207  Q
    |||| |||||||||||||| |||||    
T  6593526 gtttcaatagttgaatcacgtcttg 6593550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 226
Target Start/End: Original strand, 6541725 - 6541866
Alignment:
Q  85 aaaatagggaccaatttgatcataaatggctttagcaatagctgatttaccaacccctgccatcccccatatcccgagtaggagaggagattttgattgt 184  Q
    |||| ||||||||| || || ||||||| | || || || | |||||| |||| ||||| ||||||||||||||| | ||  |||||| |||||||||||    
T  6541725 aaaaaagggaccaaatttatgataaatgacattggcgatggttgatttgccaatccctgtcatcccccatatccctactaaaagaggacattttgattgt 6541824  T
Q  185 tttaatagttgaatcacatcttgggcacgagaatttatgctc 226  Q
    || ||||||||||||||||||||||||||||| | |||||||    
T  6541825 ttcaatagttgaatcacatcttgggcacgagagtgtatgctc 6541866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 82 - 207
Target Start/End: Complemental strand, 6646872 - 6646747
Alignment:
Q  82 ctcaaaatagggaccaatttgatcataaatggctttagcaatagctgatttaccaacccctgccatcccccatatcccgagtaggagaggagattttgat 181  Q
    ||||||||| |||||||| |||| |||||||||||  ||||| | ||||||||| | ||||||||||||||||||||| | ||||||||||  | |||||    
T  6646872 ctcaaaataaggaccaatctgattataaatggcttcggcaatggttgatttaccgatccctgccatcccccatatccctattaggagaggacttcttgat 6646773  T
Q  182 tgttttaatagttgaatcacatcttg 207  Q
    ||||| || || ||||||||||||||    
T  6646772 tgtttcaacaggtgaatcacatcttg 6646747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 82 - 207
Target Start/End: Complemental strand, 6769354 - 6769229
Alignment:
Q  82 ctcaaaatagggaccaatttgatcataaatggctttagcaatagctgatttaccaacccctgccatcccccatatcccgagtaggagaggagattttgat 181  Q
    |||||||||||||| |||||||| | |||||| ||  ||||| |  | |||||||| ||||| ||||||||| ||||| | ||||| |||||||||||||    
T  6769354 ctcaaaatagggactaatttgattaaaaatggattgggcaatggtagttttaccaatccctgtcatcccccaaatcccaattaggaaaggagattttgat 6769255  T
Q  182 tgttttaatagttgaatcacatcttg 207  Q
    ||||| |||| |||||||||||||||    
T  6769254 tgtttcaataattgaatcacatcttg 6769229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 7890930 - 7890991
Alignment:
Q  98 atttgatcataaatggctttagcaatagctgatttaccaacccctgccatcccccatatccc 159  Q
    ||||||| |||| |||||||||||||   || |||||||||||| |||||||||||||||||    
T  7890930 atttgattataagtggctttagcaattattgttttaccaaccccagccatcccccatatccc 7890991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0729 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 82 - 207
Target Start/End: Original strand, 6436 - 6561
Alignment:
Q  82 ctcaaaatagggaccaatttgatcataaatggctttagcaatagctgatttaccaacccctgccatcccccatatcccgagtaggagaggagattttgat 181  Q
    |||||||||  ||||||||||||||||||||||||| ||||| | ||||||||||| ||||| ||||||||||||||| ||||||| ||||  |||||||    
T  6436 ctcaaaataaagaccaatttgatcataaatggctttggcaatggttgatttaccaatccctgtcatcccccatatccctagtaggataggactttttgat 6535  T
Q  182 tgttttaatagttgaatcacatcttg 207  Q
     |||| ||||||||||||||||||||    
T  6536 cgtttcaatagttgaatcacatcttg 6561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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