View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6396_low_2 (Length: 567)
Name: NF6396_low_2
Description: NF6396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6396_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 16 - 560
Target Start/End: Original strand, 6915703 - 6916247
Alignment:
| Q |
16 |
aaatacacaatgacttctatgaatgttcctgagcccgtgatgtcattagctgtacagccagtctcaaaagattctggagggaaattttcaaaagctttga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6915703 |
aaatacacaatgacttctatgaatgttcctgagcccgtgatgtcattagctgtacagccagtctcaaaagattctggagggaaattttcaaaagctttga |
6915802 |
T |
|
| Q |
116 |
accgcttccaaagagaggatcctactttccgtgttagcttggacccagagagtgggcaaacaatcatttctggaatgggagaactacacttagatattta |
215 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6915803 |
accgcttccaaagagaggatcctacttttcgtgttagcttggacccagagagtgggcaaacaatcatttctggaatgggagaactacacttagatattta |
6915902 |
T |
|
| Q |
216 |
tgttaaatgcattaagatggagtatggggttgatgctacagttggaaagccccgggtaaacttcagagaaactgttactcaacgtgctgattttgattat |
315 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6915903 |
tgttaaacgcattaagatggagtatggggttgatgctacagttggaaagccccgggtaaacttcagagaaactgttactcaacgtgctgattttgattat |
6916002 |
T |
|
| Q |
316 |
ttacataagaagcaatctggaggacaaggacaatatggacgagtgattggatatattgaaccacttcctgctgggtcaggaactaagtttgaatttgaca |
415 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916003 |
ttacataagaagcaatctggagggcaaggacaatatggacgagtgattggatatattgaaccacttcctgctgggtcaggaactaagtttgaatttgaca |
6916102 |
T |
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| Q |
416 |
acatgcttgttggtcaagctattccatcgaattttttccctgcaattgagaaaggttttaaagaagctgccaactctggtgccttgattggacatccagt |
515 |
Q |
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| T |
6916103 |
acatgcttgttggtcaagctattccatcgaattttttccctgcaattgagaaaggttttaaagaagctgccaactctggtgccttgattggacatccagt |
6916202 |
T |
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| Q |
516 |
tgaaaatctccgagttgtcttgacagatggtgctgctgatgatgt |
560 |
Q |
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| T |
6916203 |
tcaaaatctccgagttgtcttgacagatggtgctgctcatgatgt |
6916247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 243 - 365
Target Start/End: Complemental strand, 15039391 - 15039269
Alignment:
| Q |
243 |
ggttgatgctacagttggaaagccccgggtaaacttcagagaaactgttactcaacgtgctgattttgattatttacataagaagcaatctggaggacaa |
342 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
15039391 |
ggttgatgctacagttggaaagccccgtgtaaacttcagagaaactgttactcaacgtgctgattttgattatttacataagaagcaatccggagggcaa |
15039292 |
T |
|
| Q |
343 |
ggacaatatggacgagtgattgg |
365 |
Q |
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|||||||||||||| |||||||| |
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| T |
15039291 |
ggacaatatggacgggtgattgg |
15039269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 367 - 491
Target Start/End: Complemental strand, 15038438 - 15038314
Alignment:
| Q |
367 |
tatattgaaccacttcctgctgggtcaggaactaagtttgaatttgacaacatgcttgttggtcaagctattccatcgaattttttccctgcaattgaga |
466 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
15038438 |
tatattgaaccactccctgctgggtcagaaactaagtttgaatttgaaaacatgcttgttggtcaagctattccatcaaattttttcgctgcaattgaga |
15038339 |
T |
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| Q |
467 |
aaggttttaaagaagctgccaactc |
491 |
Q |
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||||||||| ||||||||||||||| |
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| T |
15038338 |
aaggttttatagaagctgccaactc |
15038314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 15040137 - 15040064
Alignment:
| Q |
100 |
ttttcaaaagctttgaaccgcttccaaagagaggatcctactttccgtgttagcttggacccagagagtgggca |
173 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
15040137 |
ttttcaaaagctttgaaccgcttccaaagagaggatcctactttccgtgttggcttggacccagagagtgggca |
15040064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 15040321 - 15040241
Alignment:
| Q |
16 |
aaatacacaatgacttctatgaatgttcctgagcccgtgatgtcattagctgtacagccagtctcaaaagattctggaggg |
96 |
Q |
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||||| ||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15040321 |
aaatatacaatgacttcaatgagtgttcctgagcctgtgatgtcattagctgtacagccagtctcaaaagattctggaggg |
15040241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 497 - 552
Target Start/End: Complemental strand, 15038167 - 15038112
Alignment:
| Q |
497 |
ccttgattggacatccagttgaaaatctccgagttgtcttgacagatggtgctgct |
552 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
15038167 |
ccttaattggacatcccgttgaaaatctccgagttgtcttgacagatggtgctgct |
15038112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 15039977 - 15039923
Alignment:
| Q |
175 |
acaatcatttctggaatgggagaactacacttagatatttatgttaaatgcatta |
229 |
Q |
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||||| |||||||||||||||||||| ||||||||||| |||||| || |||||| |
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| T |
15039977 |
acaattatttctggaatgggagaactgcacttagatatctatgttgaacgcatta |
15039923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 43895598 - 43895529
Alignment:
| Q |
76 |
gtctcaaaagattctggagggaaattttcaaaagctttgaaccgcttccaaagagaggatcctactttcc |
145 |
Q |
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||||||||||||||||||||| ||||||||| |||||||| | || |||||| ||||||||||||||| |
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| T |
43895598 |
gtctcaaaagattctggagggcaattttcaactgctttgaatggttttcaaagaaaggatcctactttcc |
43895529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 44306022 - 44305953
Alignment:
| Q |
76 |
gtctcaaaagattctggagggaaattttcaaaagctttgaaccgcttccaaagagaggatcctactttcc |
145 |
Q |
| |
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||||||||||||||||||||| ||||||||| |||||||| | || |||||| ||||||||||||||| |
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| T |
44306022 |
gtctcaaaagattctggagggcaattttcaagtgctttgaatggttttcaaagaaaggatcctactttcc |
44305953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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