View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6396_low_3 (Length: 511)

Name: NF6396_low_3
Description: NF6396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6396_low_3
NF6396_low_3
[»] chr6 (2 HSPs)
chr6 (9-511)||(3846222-3846737)
chr6 (471-511)||(3846780-3846820)
[»] chr5 (7 HSPs)
chr5 (235-319)||(16829229-16829313)
chr5 (234-315)||(11417418-11417500)
chr5 (238-315)||(35463984-35464061)
chr5 (270-315)||(30908911-30908956)
chr5 (46-88)||(18542227-18542269)
chr5 (233-266)||(35463979-35464012)
chr5 (270-318)||(28351008-28351056)
[»] chr1 (9 HSPs)
chr1 (239-319)||(29853196-29853276)
chr1 (241-315)||(1442067-1442141)
chr1 (238-294)||(15497534-15497588)
chr1 (235-282)||(44661795-44661842)
chr1 (246-315)||(8174127-8174196)
chr1 (238-319)||(10325316-10325396)
chr1 (246-319)||(27634299-27634371)
chr1 (238-291)||(47154705-47154758)
chr1 (238-290)||(11016646-11016698)
[»] chr2 (7 HSPs)
chr2 (233-306)||(11030431-11030504)
chr2 (238-280)||(644097-644139)
chr2 (236-295)||(1220808-1220867)
chr2 (246-297)||(32965699-32965750)
chr2 (238-313)||(30429100-30429175)
chr2 (233-266)||(27279513-27279546)
chr2 (246-315)||(41221669-41221738)
[»] chr7 (9 HSPs)
chr7 (238-318)||(29229701-29229781)
chr7 (238-307)||(12423685-12423754)
chr7 (246-318)||(39751093-39751165)
chr7 (234-308)||(34427545-34427619)
chr7 (237-293)||(24283094-24283150)
chr7 (235-266)||(7307779-7307810)
chr7 (238-280)||(35985291-35985333)
chr7 (238-280)||(36006699-36006741)
chr7 (233-293)||(25778359-25778419)
[»] chr4 (5 HSPs)
chr4 (238-317)||(7277448-7277527)
chr4 (235-319)||(10304684-10304768)
chr4 (43-88)||(20742367-20742412)
chr4 (238-292)||(24099596-24099650)
chr4 (46-87)||(43061690-43061731)
[»] chr3 (8 HSPs)
chr3 (235-307)||(11534795-11534867)
chr3 (52-87)||(15802352-15802387)
chr3 (233-300)||(25108954-25109020)
chr3 (239-305)||(41288138-41288204)
chr3 (235-284)||(26331246-26331295)
chr3 (238-308)||(26331256-26331325)
chr3 (237-307)||(45799938-45800008)
chr3 (46-90)||(26073227-26073271)
[»] chr8 (4 HSPs)
chr8 (234-294)||(14578530-14578590)
chr8 (52-87)||(11556961-11556996)
chr8 (22-88)||(23559640-23559706)
chr8 (238-318)||(18147839-18147920)
[»] scaffold0001 (1 HSPs)
scaffold0001 (46-87)||(398638-398679)


Alignment Details
Target: chr6 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 9 - 511
Target Start/End: Original strand, 3846222 - 3846737
Alignment:
Q  9 cacagacatcaaccacgacatttactataacacataaacacaagtaataatttgagaaaatttaagtaattgaatgtaattaaatgcatcagtgccttgt 108  Q
    |||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3846222 cacaaacatcaaacacgacatttactatgacacataaacacaagtaataatttgagaaaatttaagtaattgaatgtaattaaatgcatcagtgccttgt 3846321  T
Q  109 caggggtatgcaccaacatgtgtcggacaccagttttcaatctaaagtgtcaatacaacatccaggctatgaagcattgacacatacacgagcatcgaac 208  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  3846322 caggggtatgcaccaacatgtgtcagacaccagttttcaatctaaagtgtcaatacaacatccaggctatgaagcattgacacatacatgaacatcgaac 3846421  T
Q  209 aaactacttcctccggtcacatttataa-----------ttttttaggttcattgaatgactaatgtatatgacctatatatagaccggatacattagat 297  Q
    |||||||| ||| |||||||||||||||           ||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  3846422 aaactactcccttcggtcacatttataagcaaaaaataattttttaagttcattgaataaataatgtatatgacctatatatagaccggatacattagat 3846521  T
Q  298 attaaatgaacttaaaaagttannnnnnngcttataaatgtgaccatatagagtatgaagcattggcacattcgcggacattgaacacgacagagacaat 397  Q
    ||||||||||||||||||||||       ||||||||||| ||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3846522 attaaatgaacttaaaaagttatttttttgcttataaatgcgaccagagagagtatgaagcattgacacattcgcggacattgaacacgacagagacaat 3846621  T
Q  398 gacacatat--attagtaataattaaaggaaaatgtgattgaatgtaaccacatgcatcagcatcggcatcgtgtagtgtcagacacacagacatatcac 495  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3846622 gacacatatatattagtaataattaaaggaaaatgtgattgaatgtaaccacatgcatcagcatcggcatcgtgtagtgtcagacacacagacatatcac 3846721  T
Q  496 ataccggacatgcatt 511  Q
    ||||||||||||||||    
T  3846722 ataccggacatgcatt 3846737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 471 - 511
Target Start/End: Original strand, 3846780 - 3846820
Alignment:
Q  471 agtgtcagacacacagacatatcacataccggacatgcatt 511  Q
    |||||||||| ||||| ||||||||||||||||||||||||    
T  3846780 agtgtcagactcacaggcatatcacataccggacatgcatt 3846820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 235 - 319
Target Start/End: Complemental strand, 16829313 - 16829229
Alignment:
Q  235 aattttttaggttcattgaatgactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaagtta 319  Q
    |||||||||||||||| |||| |||||||||| |||||| |||||| ||  ||||||||||||||| ||||||||||||||||||    
T  16829313 aattttttaggttcatcgaataactaatgtatctgacctttatataaactagatacattagatattcaatgaacttaaaaagtta 16829229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 11417500 - 11417418
Alignment:
Q  234 taattttttaggttcattgaatgactaatgtatatgacctatatata-gaccggatacattagatattaaatgaacttaaaaa 315  Q
    ||||||||||||||||||||||||||||||||||||  ||||| ||| |||| ||| || ||  |||| ||||||||||||||    
T  11417500 taattttttaggttcattgaatgactaatgtatatggtctataaatatgaccagattcaataattattcaatgaacttaaaaa 11417418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 315
Target Start/End: Complemental strand, 35464061 - 35463984
Alignment:
Q  238 tttttaggttcattgaatgactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaa 315  Q
    ||||||||||| |||| |  ||||||||| | || ||||||||||||||||||||||| |||| ||||||| ||||||    
T  35464061 tttttaggttctttgagtagctaatgtatctaacatatatatagaccggatacattagttattcaatgaacctaaaaa 35463984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 30908956 - 30908911
Alignment:
Q  270 acctatatatagaccggatacattagatattaaatgaacttaaaaa 315  Q
    |||||||||||||||| ||||||||  |||||||||||||||||||    
T  30908956 acctatatatagaccgaatacattatttattaaatgaacttaaaaa 30908911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 18542269 - 18542227
Alignment:
Q  46 acacaagtaataatttgagaaaatttaagtaattgaatgtaat 88  Q
    |||| |||||||||||||||||||  |||||||||||||||||    
T  18542269 acaccagtaataatttgagaaaatacaagtaattgaatgtaat 18542227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 266
Target Start/End: Original strand, 35463979 - 35464012
Alignment:
Q  233 ataattttttaggttcattgaatgactaatgtat 266  Q
    ||||||||||||||||||||||| ||||||||||    
T  35463979 ataattttttaggttcattgaataactaatgtat 35464012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 28351008 - 28351056
Alignment:
Q  270 acctatatatagaccggatacattagatattaaatgaacttaaaaagtt 318  Q
    ||||||| |||||||||||||||||| |||| ||||||  |||||||||    
T  28351008 acctataaatagaccggatacattagttattcaatgaatctaaaaagtt 28351056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 319
Target Start/End: Original strand, 29853196 - 29853276
Alignment:
Q  239 ttttaggttcattgaatgactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaagtta 319  Q
    ||||||||||||| ||| |||||||||| |||| |||||||||| || ||||||||  |||||||||||| ||||||||||    
T  29853196 ttttaggttcattcaataactaatgtatctgacttatatatagatcgaatacattatttattaaatgaacataaaaagtta 29853276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 315
Target Start/End: Original strand, 1442067 - 1442141
Alignment:
Q  241 ttaggttcattgaatgactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaa 315  Q
    ||||||| ||||||| |||||||||| ||| ||||||||||  |||||| ||||  |||| ||||||||||||||    
T  1442067 ttaggtttattgaataactaatgtatctgatctatatataggtcggatatattaattatttaatgaacttaaaaa 1442141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 15497588 - 15497534
Alignment:
Q  238 tttttaggttcattgaatgactaatgtatatgacctatatatagaccggatacatta 294  Q
    |||||||  ||||||||| |||||||||||||||  |||||||||||||||||||||    
T  15497588 tttttagactcattgaataactaatgtatatgac--atatatagaccggatacatta 15497534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 44661795 - 44661842
Alignment:
Q  235 aattttttaggttcattgaatgactaatgtatatgacctatatataga 282  Q
    ||||||||| ||||||||||| |||||||||| | |||||||||||||    
T  44661795 aattttttaagttcattgaataactaatgtatcttacctatatataga 44661842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 315
Target Start/End: Complemental strand, 8174196 - 8174127
Alignment:
Q  246 ttcattgaatgactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaa 315  Q
    |||||||||||| |||||||| ||  ||||||| | | |||||||| |||||||| ||||||| ||||||    
T  8174196 ttcattgaatgattaatgtatctggtctatataaaaatcggatacaatagatattcaatgaacctaaaaa 8174127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 319
Target Start/End: Original strand, 10325316 - 10325396
Alignment:
Q  238 tttttaggttcattgaatgactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaagtta 319  Q
    |||||||||||||||||| ||| |||||| ||  |||||| || ||| |||||||||| |||| ||||||  ||||||||||    
T  10325316 tttttaggttcattgaataacttatgtatttgctctatat-tacaccagatacattagttatttaatgaatataaaaagtta 10325396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 319
Target Start/End: Complemental strand, 27634371 - 27634299
Alignment:
Q  246 ttcattgaatgactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaagtta 319  Q
    |||||||||| |||||| ||| ||||  |||||| |||||| ||||||||||||| ||| ||| ||||||||||    
T  27634371 ttcattgaataactaatctatttgactaatatattgaccgg-tacattagatattcaattaacctaaaaagtta 27634299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 47154758 - 47154705
Alignment:
Q  238 tttttaggttcattgaatgactaatgtatatgacctatatatagaccggataca 291  Q
    |||||||||||||| ||| | |||||||| || ||||||||||||| |||||||    
T  47154758 tttttaggttcatttaataaataatgtatctggcctatatatagactggataca 47154705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 11016698 - 11016646
Alignment:
Q  238 tttttaggttcattgaatgactaatgtatatgacctatatatagaccggatac 290  Q
    |||||||||| ||||||| |||||||||||||| |  |||||||||| |||||    
T  11016698 tttttaggtttattgaataactaatgtatatgatcattatatagaccagatac 11016646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 306
Target Start/End: Original strand, 11030431 - 11030504
Alignment:
Q  233 ataattttttaggttcattgaatgactaatgtatatgacctatatatagaccggatacattagatattaaatga 306  Q
    ||||| |||||||||||||||||||||||||||| |||   ||||||||| ||||||||||| ||||| |||||    
T  11030431 ataatattttaggttcattgaatgactaatgtatttgataaatatatagatcggatacattaaatattcaatga 11030504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 238 - 280
Target Start/End: Complemental strand, 644139 - 644097
Alignment:
Q  238 tttttaggttcattgaatgactaatgtatatgacctatatata 280  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  644139 tttttaggttcattgaataactaatgtatatgacctatatata 644097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 1220808 - 1220867
Alignment:
Q  236 attttttaggttcattgaatgactaatgtatatgacctatatatagaccggatacattag 295  Q
    ||||| ||| |||||||||| |||||||||| |||||||||||||||||| ||| |||||    
T  1220808 attttgtagattcattgaataactaatgtatttgacctatatatagaccgaataaattag 1220867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 246 - 297
Target Start/End: Complemental strand, 32965750 - 32965699
Alignment:
Q  246 ttcattgaatgactaatgtatatgacctatatatagaccggatacattagat 297  Q
    |||||||||| |||||||||| || ||||||||||||||||||||| |||||    
T  32965750 ttcattgaataactaatgtatttggcctatatatagaccggatacaatagat 32965699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 313
Target Start/End: Original strand, 30429100 - 30429175
Alignment:
Q  238 tttttaggttcattgaatgactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaa 313  Q
    |||||||||||||| ||| | |||||||| |||||| |||||||||  |||||||||| |||| ||| ||| ||||    
T  30429100 tttttaggttcattcaataattaatgtatctgacctttatatagactagatacattagttattcaataaacctaaa 30429175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 266
Target Start/End: Original strand, 27279513 - 27279546
Alignment:
Q  233 ataattttttaggttcattgaatgactaatgtat 266  Q
    ||||||||||||||||||||||| ||||||||||    
T  27279513 ataattttttaggttcattgaataactaatgtat 27279546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 315
Target Start/End: Original strand, 41221669 - 41221738
Alignment:
Q  246 ttcattgaatgactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaa 315  Q
    |||||| ||| | |||||||| |||| |  |||||||||||||||||||| |||| ||||||| ||||||    
T  41221669 ttcatttaataattaatgtatctgactttcatatagaccggatacattagttattcaatgaacctaaaaa 41221738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 238 - 318
Target Start/End: Complemental strand, 29229781 - 29229701
Alignment:
Q  238 tttttaggttcattgaatgactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaagtt 318  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||  || |||||| | || ||||||  |||||||||    
T  29229781 tttttaggttcattgaataactaatgtatctgacctatatatagaccaaatgcattagttgtttaatgaatctaaaaagtt 29229701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 12423754 - 12423685
Alignment:
Q  238 tttttaggttcattgaatgactaatgtatatgacctatatatagaccggatacattagatattaaatgaa 307  Q
    ||||||||||||||||||   |||||||| |||||||||||||||||  |||| ||||||||| ||||||    
T  12423754 tttttaggttcattgaatacataatgtatttgacctatatatagaccaaatacgttagatattgaatgaa 12423685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 318
Target Start/End: Complemental strand, 39751165 - 39751093
Alignment:
Q  246 ttcattgaatgactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaagtt 318  Q
    |||||||||| |||||||||| | ||| |||||||||||  |||||||||||||| ||||||  |||||||||    
T  39751165 ttcattgaataactaatgtattttaccaatatatagaccatatacattagatatttaatgaatctaaaaagtt 39751093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 34427619 - 34427545
Alignment:
Q  234 taattttttaggttcattgaatgactaatgtatatgacctatatatagaccggatacattagatattaaatgaac 308  Q
    |||||||||| ||||||| ||| |||||| ||| |||||||||||||||| | ||||||||  |||| |||||||    
T  34427619 taattttttaagttcattcaataactaatatatctgacctatatatagactgaatacattatttattgaatgaac 34427545  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 24283094 - 24283150
Alignment:
Q  237 ttttttaggttcattgaatgactaatgtatatgacctatatatagaccggatacatt 293  Q
    |||||||  |||||||||| |||||||||| |||| |||||||| ||||||||||||    
T  24283094 ttttttaaattcattgaataactaatgtatctgacatatatataaaccggatacatt 24283150  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 266
Target Start/End: Complemental strand, 7307810 - 7307779
Alignment:
Q  235 aattttttaggttcattgaatgactaatgtat 266  Q
    ||||||||||||||||||||||||||||||||    
T  7307810 aattttttaggttcattgaatgactaatgtat 7307779  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 35985291 - 35985333
Alignment:
Q  238 tttttaggttcattgaatgactaatgtatatgacctatatata 280  Q
    ||||||| || ||||||| ||||||||||||||||||||||||    
T  35985291 tttttagattaattgaataactaatgtatatgacctatatata 35985333  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 36006699 - 36006741
Alignment:
Q  238 tttttaggttcattgaatgactaatgtatatgacctatatata 280  Q
    ||||||| || ||||||| ||||||||||||||||||||||||    
T  36006699 tttttagattaattgaataactaatgtatatgacctatatata 36006741  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 25778419 - 25778359
Alignment:
Q  233 ataattttttaggttcattgaatgactaatgtatatgacctatatatagaccggatacatt 293  Q
    |||||||||| | || ||||||  |||||||||| ||||||||||||||||  ||||||||    
T  25778419 ataattttttcgatttattgaacaactaatgtatctgacctatatatagacacgatacatt 25778359  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 317
Target Start/End: Original strand, 7277448 - 7277527
Alignment:
Q  238 tttttaggttcattgaatgactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaagt 317  Q
    |||||||||||||||||| |||||||||| |||| | |||||||| | ||||||| || |||| ||| ||||||||||||    
T  7277448 tttttaggttcattgaataactaatgtatctgacttttatatagatcagatacatgagttattcaataaacttaaaaagt 7277527  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 319
Target Start/End: Complemental strand, 10304768 - 10304684
Alignment:
Q  235 aattttttaggttcattgaatgactaatgtatatgacctatatatagaccggatacattagatattaaatgaacttaaaaagtta 319  Q
    |||||||||  |||||| ||| |||||||||||||||| ||||||||||||| | |||| | |||| ||||||| | ||||||||    
T  10304768 aattttttaaattcattaaataactaatgtatatgaccgatatatagaccggcttcattggttatttaatgaacatgaaaagtta 10304684  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 20742367 - 20742412
Alignment:
Q  43 taaacacaagtaataatttgagaaaatttaagtaattgaatgtaat 88  Q
    ||||||| |||||||||||||||||||  |||||||||||||||||    
T  20742367 taaacaccagtaataatttgagaaaatgcaagtaattgaatgtaat 20742412  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 24099650 - 24099596
Alignment:
Q  238 tttttaggttcattgaatgactaatgtatatgacctatatatagaccggatacat 292  Q
    ||||||||||||| |||| | |||| ||| ||||||||||||||||| |||||||    
T  24099650 tttttaggttcatcgaataaataatatatttgacctatatatagacctgatacat 24099596  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 43061731 - 43061690
Alignment:
Q  46 acacaagtaataatttgagaaaatttaagtaattgaatgtaa 87  Q
    |||| ||||||||||||||||||| ||| |||||||||||||    
T  43061731 acactagtaataatttgagaaaatataaataattgaatgtaa 43061690  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 307
Target Start/End: Complemental strand, 11534867 - 11534795
Alignment:
Q  235 aattttttaggttcattgaatgactaatgtatatgacctatatatagaccggatacattagatattaaatgaa 307  Q
    |||||||||| ||||||||||   |||||||| |||||||||||||||||  ||||||||| |||| ||||||    
T  11534867 aattttttagattcattgaatatttaatgtatctgacctatatatagaccatatacattaggtattcaatgaa 11534795  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 52 - 87
Target Start/End: Original strand, 15802352 - 15802387
Alignment:
Q  52 gtaataatttgagaaaatttaagtaattgaatgtaa 87  Q
    ||||||||||||||||||||||||||||||||||||    
T  15802352 gtaataatttgagaaaatttaagtaattgaatgtaa 15802387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 25109020 - 25108954
Alignment:
Q  233 ataattttttaggttcattgaatgactaatgtatatgacctatatatagaccggatacattagatatt 300  Q
    ||||||||||| ||||||||||| ||||||||||||| ||| |||||| |||| ||||||||| ||||    
T  25109020 ataattttttatgttcattgaataactaatgtatatg-cctttatatataccgtatacattagttatt 25108954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 41288204 - 41288138
Alignment:
Q  239 ttttaggttcattgaatgactaatgtatatgacctatatatagaccggatacattagatattaaatg 305  Q
    |||||||||| |||| |  ||||||||| |||| ||||||||||||  |||||||||||||||||||    
T  41288204 ttttaggttcgttgattacctaatgtatttgacttatatatagaccaaatacattagatattaaatg 41288138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 26331246 - 26331295
Alignment:
Q  235 aattttttaggttcattgaatgactaatgtatatgacctatatatagacc 284  Q
    |||||| ||||||||||||||||||||||||| ||  |||||||||||||    
T  26331246 aattttctaggttcattgaatgactaatgtatctggtctatatatagacc 26331295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 308
Target Start/End: Complemental strand, 26331325 - 26331256
Alignment:
Q  238 tttttaggttcattgaatgactaatgtatatgacctatatatagaccggatacattagatattaaatgaac 308  Q
    ||||||||||||||||| ||||||||| | ||  ||||||||||||| ||||||||||  ||| |||||||    
T  26331325 tttttaggttcattgaaagactaatgt-tttggtctatatatagaccagatacattagtcattcaatgaac 26331256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 307
Target Start/End: Complemental strand, 45800008 - 45799938
Alignment:
Q  237 ttttttaggttcattgaatgactaatgtatatgacctatatatagaccggatacattagatattaaatgaa 307  Q
    |||||||| ||||||||||   |||||||| ||| |||||| ||||||  ||||||||||||| |||||||    
T  45800008 ttttttagattcattgaatacataatgtatttgatctatatgtagaccaaatacattagatataaaatgaa 45799938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 26073227 - 26073271
Alignment:
Q  46 acacaagtaataatttgagaaaatttaagtaattgaatgtaatta 90  Q
    |||||||||||||||| ||||| |  |||||||||||||||||||    
T  26073227 acacaagtaataatttaagaaagtagaagtaattgaatgtaatta 26073271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 294
Target Start/End: Original strand, 14578530 - 14578590
Alignment:
Q  234 taattttttaggttcattgaatgactaatgtatatgacctatatatagaccggatacatta 294  Q
    |||| ||||||||||||||||| | |||||||| ||| ||||||||||||| |||| ||||    
T  14578530 taatattttaggttcattgaataattaatgtatctgatctatatatagacccgatatatta 14578590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 87
Target Start/End: Complemental strand, 11556996 - 11556961
Alignment:
Q  52 gtaataatttgagaaaatttaagtaattgaatgtaa 87  Q
    |||||||||||||||||||||||| |||||||||||    
T  11556996 gtaataatttgagaaaatttaagtgattgaatgtaa 11556961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 23559640 - 23559706
Alignment:
Q  22 cacgacatttactataacacataaacacaagtaataatttgagaaaatttaagtaattgaatgtaat 88  Q
    ||||||| | ||||||||||||| |||  ||||||||||| | |||||| |||| ||||||||||||    
T  23559640 cacgacagtgactataacacatagacatcagtaataatttcaaaaaattgaagtgattgaatgtaat 23559706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 318
Target Start/End: Complemental strand, 18147920 - 18147839
Alignment:
Q  238 tttttaggttcattgaatgactaatgtatatgacctatatata-gaccggatacattagatattaaatgaacttaaaaagtt 318  Q
    |||||||||  ||||||| ||| |||||| |||||||||  || ||| ||||||||||| |||| ||||||| |||||||||    
T  18147920 tttttaggtatattgaataactcatgtatctgacctataattatgactggatacattagttattcaatgaacctaaaaagtt 18147839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 398638 - 398679
Alignment:
Q  46 acacaagtaataatttgagaaaatttaagtaattgaatgtaa 87  Q
    |||||| ||||||||| |||||||| ||||||||||||||||    
T  398638 acacaaataataatttaagaaaattgaagtaattgaatgtaa 398679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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