View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6396_low_4 (Length: 437)
Name: NF6396_low_4
Description: NF6396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6396_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 31 - 432
Target Start/End: Original strand, 21445314 - 21445715
Alignment:
| Q |
31 |
gctattggcaccggctcacttctagttctaaggaattggtcgagattttggcggtatttaatcccatggattttagctccaagctccacaacatcaagct |
130 |
Q |
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| T |
21445314 |
gctattggcaccggctcacttctagttctaaggaattggtcgagattttggcggtatttaatcccatggattttagctccaagctccacaacatcaagct |
21445413 |
T |
|
| Q |
131 |
tggtctttaactcatagtcatcatctgtccaataaccattttccaacacatcttccattgcaagatcgtcgtactcttcatcagacttcgttgattcctc |
230 |
Q |
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||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21445414 |
tggtctttaactcgtaatcatcatctgtccaataaccattttccaacacatcttccattgcaagatcgtcgtactcttcatcagacttcgttgattcctc |
21445513 |
T |
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| Q |
231 |
gtctacagatccaacctggagcgcaaaatacaaaaggactcaaaattagttaaaagtactactatgtgtagcatcgatactttcagattgaaaatgtgtc |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21445514 |
gtctacagatccaacctggagcgcaaaatacaaaaggactcaaaattagttaaaagtactactatgtgtagcatcgatactttcagattgaaaatgtgtc |
21445613 |
T |
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| Q |
331 |
aaatgtctgacaccgaccgacacaccaccgatactctagtttacattgagttgatttcatattctcaaattattatcagtgttgtctagagtctgtgctg |
430 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
21445614 |
aaatgtctgacaccgaccgacacaccaccgatactctagtttacattgagttgatttcatattctcaaattattatcagtgttgtctagagtctgtggtg |
21445713 |
T |
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| Q |
431 |
ct |
432 |
Q |
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|| |
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| T |
21445714 |
ct |
21445715 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 40686896 - 40686811
Alignment:
| Q |
148 |
tcatcatctgtccaataaccattttccaacacatcttccattgcaagatcgtcgtactcttcatcagacttcgttgattcctcgtc |
233 |
Q |
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|||||||||| |||||| ||| |||| |||||||| |||||| | ||| || ||||||||||||||||| |||||||||||||| |
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| T |
40686896 |
tcatcatctgaccaatatccactttcaggcacatcttgcattgccaaatcatcatactcttcatcagacttggttgattcctcgtc |
40686811 |
T |
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