View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6396_low_6 (Length: 368)
Name: NF6396_low_6
Description: NF6396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6396_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 18132885 - 18132993
Alignment:
| Q |
16 |
tgaaaccaaatgaattcacacaaatttgatgttgaacactacaaaataattggacacatgaaagaaacttcctttcattcattcattgacaattcaataa |
115 |
Q |
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| T |
18132885 |
tgaaaccaaattaattcacacaaatttgatgttgaacactacaaaataattggacacatgaaagaaacttcctttcattcattcattgataattcaataa |
18132984 |
T |
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| Q |
116 |
gttacaaac |
124 |
Q |
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| T |
18132985 |
gttacaaac |
18132993 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 7799424 - 7799473
Alignment:
| Q |
211 |
cttcttccttgaatattcaatcttcttcttcaacttctcatttttcttga |
260 |
Q |
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| T |
7799424 |
cttcttccttgaatgttgtagcttcttcttcaacttctcatttttcttga |
7799473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 19398525 - 19398574
Alignment:
| Q |
211 |
cttcttccttgaatattcaatcttcttcttcaacttctcatttttcttga |
260 |
Q |
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| T |
19398525 |
cttcttccttgaatgttgtagcttcttcttcaaattctcatttttcttga |
19398574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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