View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6396_low_8 (Length: 332)
Name: NF6396_low_8
Description: NF6396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6396_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 36 - 327
Target Start/End: Original strand, 42212957 - 42213259
Alignment:
| Q |
36 |
aattattattgttcaattatgaagatatcatcctgttctacaatttgacttcctcatcggtcatcatggacttagctgagttttattttcccttgttaac |
135 |
Q |
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| T |
42212957 |
aattattattgttcaattatgaagatatcatcctgttctacaatttgacttcctcatcggtcatcatggacttagctgagttttattttcccttgttaac |
42213056 |
T |
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| Q |
136 |
attttgggtccaatagtatattttgttctttgttaaagtttatttatacttatatgagtgataatattaatatgtttcttatttttcattaattattgtt |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42213057 |
attttgggtccaatagtatattttgttctttgttaaagtttatttatacttatatgagtgataatattaatatgtttcttatttttcattaattattgtt |
42213156 |
T |
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| Q |
236 |
ctgctcctccaagatggtagctagtaaatgtcttgtcttgagaga-----------ttttctttaatttattgtatcaaattggtagttatgcctatgct |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
42213157 |
ctgctcctccaagatggtagctagtaaatgtcttgtcttgagagattttcatttgtttttctttaatttattgtatcaaattggtagttatgcttatgat |
42213256 |
T |
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| Q |
325 |
tct |
327 |
Q |
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||| |
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| T |
42213257 |
tct |
42213259 |
T |
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