View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6396_low_9 (Length: 328)
Name: NF6396_low_9
Description: NF6396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6396_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 9924923 - 9925210
Alignment:
| Q |
18 |
agtataagttcttactaactgttgcagagaaatacgacattcagaggggcctataaccggaaatagagtaggccttactatgttagacgttgtgaatcta |
117 |
Q |
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| T |
9924923 |
agtataagttcttaccaactattgcagagaaatacgacattccgaggggcctataaccggaaatagagtaggccttactatgttagacgttgtgaatcta |
9925022 |
T |
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| Q |
118 |
aaccttaggtattgattgatctagaagcatgcacttatcaaacaagaacatatagaagatttgaagaatcctaatcgttgtcgaacnnnnnnnncaaacc |
217 |
Q |
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| T |
9925023 |
aaccttaggtattgattgatctagaagcatgcacttatcaaacaagaacatataggagatttgaagaatcctaatcgttgtcgaac-tttttttcaaacc |
9925121 |
T |
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| Q |
218 |
cttttggagacgataactttagttcattgtatggtatgaaccgacaatccttgtaaagacgataacttattacttggaggggttttgtg |
306 |
Q |
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| T |
9925122 |
cttttggagatgataaatttagttcattgtatggtatgaaccgacaattcttgtaaagacgataacttattacttggaggggttttgtg |
9925210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 9497386 - 9497442
Alignment:
| Q |
85 |
gtaggccttactatgttagacgttgtgaatctaaaccttaggtattgattgatctag |
141 |
Q |
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| T |
9497386 |
gtaggccttactttgttagacgtcgtgaatataaatcttaggtagtatttgatctag |
9497442 |
T |
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