View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6397_high_2 (Length: 252)

Name: NF6397_high_2
Description: NF6397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6397_high_2
NF6397_high_2
[»] chr6 (9 HSPs)
chr6 (97-217)||(6606529-6606650)
chr6 (95-232)||(6631660-6631798)
chr6 (100-236)||(31117674-31117811)
chr6 (4-78)||(6606467-6606541)
chr6 (97-230)||(6612982-6613116)
chr6 (138-195)||(6615655-6615712)
chr6 (131-236)||(9146105-9146210)
chr6 (208-242)||(6608506-6608540)
chr6 (97-230)||(22823472-22823606)
[»] chr4 (4 HSPs)
chr4 (122-232)||(7116451-7116560)
chr4 (121-233)||(17374011-17374123)
chr4 (125-188)||(7116811-7116870)
chr4 (163-208)||(7110376-7110421)
[»] chr8 (1 HSPs)
chr8 (120-233)||(596413-596526)
[»] scaffold0007 (1 HSPs)
scaffold0007 (130-214)||(249926-250010)
[»] chr3 (1 HSPs)
chr3 (101-188)||(27153243-27153331)


Alignment Details
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 97 - 217
Target Start/End: Original strand, 6606529 - 6606650
Alignment:
Q  97 gttctataaattaatattgt-gcaagtcttgtaggcattgtgcatacaacaatggcagttccaagttcaattaccttaaaattttcaatactcataatca 195  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6606529 gttctataaattaatattgttgcaagtcttgcaggcattgtgcatacaacaatggcagttccaagttcaattaccttaaaattttcaatactcataatca 6606628  T
Q  196 cactacttgcatttgaggctag 217  Q
    ||||||||||||||||||||||    
T  6606629 cactacttgcatttgaggctag 6606650  T

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Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 95 - 232
Target Start/End: Original strand, 6631660 - 6631798
Alignment:
Q  95 gagttctataaattaatattg-tgcaagtcttgtaggcattgtgcatacaacaatggcagttccaagttcaattaccttaaaattttcaatactcataat 193  Q
    ||||| |||||||||| |||  ||||||| |||||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||    
T  6631660 gagttgtataaattaagattcatgcaagttttgtaggcattgcgcatacaacaatgacagttccaaattcaattagcttaaaattttcaatactcataat 6631759  T
Q  194 cacactacttgcatttgaggctagtgatactatagctat 232  Q
    || ||||||||||||||||||||||||||||||||||||    
T  6631760 catactacttgcatttgaggctagtgatactatagctat 6631798  T

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Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 100 - 236
Target Start/End: Original strand, 31117674 - 31117811
Alignment:
Q  100 ctataaattaatattg-tgcaagtcttgtaggcattgtgcatacaacaatggcagttccaagttcaattaccttaaaattttcaatactcataatcacac 198  Q
    ||||||||||| |||| || | |||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||  ||||||||| ||||||  |    
T  31117674 ctataaattaagattgatgtatgtcttgtaggcattgtgcatacaacaatggcaattccaagtgcaatcaccttaaaatcatcaatactcctaatcatgc 31117773  T
Q  199 tacttgcatttgaggctagtgatactatagctattggt 236  Q
    ||||||||||||||||||| || ||||| |||||||||    
T  31117774 tacttgcatttgaggctagagagactatcgctattggt 31117811  T

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Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 6606467 - 6606541
Alignment:
Q  4 aacggtatttgaatttgtaaaatcattcccattgttggaagcactttattgagctgcttaatgttctataaatta 78  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6606467 aacggtatttgaattggcaaaatcattcccattgttggaagcactttattgagctgtttaatgttctataaatta 6606541  T

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Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 6612982 - 6613116
Alignment:
Q  97 gttctataaattaatattg-tgcaagtcttgtaggcattgtgcatacaacaatggcagttccaagttcaattaccttaaaattttcaatactcataatca 195  Q
    ||||||||||||||||||| ||||||||  |||||||||| | ||||||||||| ||  ||||||| |||||| |||||||| |||||||||| |||  |    
T  6612982 gttctataaattaatattgatgcaagtcccgtaggcattgagtatacaacaatgacaactccaagtacaattatcttaaaatgttcaatactcctaacta 6613081  T
Q  196 cactacttgcatttgaggctagtgatactatagct 230  Q
    ||||||||||||||||||| || || |||||||||    
T  6613082 cactacttgcatttgaggccagagagactatagct 6613116  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 6615655 - 6615712
Alignment:
Q  138 catacaacaatggcagttccaagttcaattaccttaaaattttcaatactcataatca 195  Q
    ||||||||||||| |||| ||||| ||||||||||||||||||||||| || ||||||    
T  6615655 catacaacaatggaagttacaagtccaattaccttaaaattttcaatattcttaatca 6615712  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 9146210 - 9146105
Alignment:
Q  131 cattgtgcatacaacaatggcagttccaagttcaattaccttaaaattttcaatactcataatcacactacttgcatttgaggctagtgatactatagct 230  Q
    ||||||||||||||||||||||  || || | |||  |||||||||||||| || ||| |||  | ||||||||||| | ||| ||| ||||||||||||    
T  9146210 cattgtgcatacaacaatggcaactcaaaatccaacgaccttaaaattttcgattctcctaactatactacttgcatgtaaggttagagatactatagct 9146111  T
Q  231 attggt 236  Q
     |||||    
T  9146110 tttggt 9146105  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 6608506 - 6608540
Alignment:
Q  208 ttgaggctagtgatactatagctattggtcctatg 242  Q
    |||||||||||||||| ||||||||||||||||||    
T  6608506 ttgaggctagtgataccatagctattggtcctatg 6608540  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 230
Target Start/End: Complemental strand, 22823606 - 22823472
Alignment:
Q  97 gttctataaattaatattg-tgcaagtcttgtaggcattgtgcatacaacaatggcagttccaagttcaattaccttaaaattttcaatactcataatca 195  Q
    ||||||||||| ||| ||| || ||||||||||||  |||  |||||||||||| ||  ||| ||| ||||||  |||||||  ||||||||| |||       
T  22823606 gttctataaataaatgttgatgtaagtcttgtaggttttgaccatacaacaatgacaactcccagtacaattatattaaaatgctcaatactcctaactg 22823507  T
Q  196 cactacttgcatttgaggctagtgatactatagct 230  Q
     |||||||||||||||||| || || |||||||||    
T  22823506 tactacttgcatttgaggccagagagactatagct 22823472  T

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Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 122 - 232
Target Start/End: Complemental strand, 7116560 - 7116451
Alignment:
Q  122 tcttgtaggcattgtgcatacaacaatggcagttccaagttcaattaccttaaaattttcaatactcataatcacactacttgcatttgaggctagtgat 221  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||  |||||| |||| ||||||| | |||||| ||     
T  7116560 tcttgtaggcattgtgcatacaacaatggcagttccaagtt-aattaccataaaattttcaatactactaatcatactagttgcattcgtggctagagag 7116462  T
Q  222 actatagctat 232  Q
    |||||||||||    
T  7116461 actatagctat 7116451  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 121 - 233
Target Start/End: Complemental strand, 17374123 - 17374011
Alignment:
Q  121 gtcttgtaggcattgtgcatacaacaatggcagttccaagttcaattaccttaaaattttcaatactcataatcacactacttgcatttgaggctagtga 220  Q
    ||||||| ||||| ||||||||||||||||||||||||||| |||||||||| |||||||| |||||| |||||| |||| |  ||||||| ||||| ||    
T  17374123 gtcttgttggcatggtgcatacaacaatggcagttccaagtacaattaccttcaaattttcgatactcctaatcatactattctcatttgaagctagaga 17374024  T
Q  221 tactatagctatt 233  Q
     ||||||||||||    
T  17374023 aactatagctatt 17374011  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 7116870 - 7116811
Alignment:
Q  125 tgtaggcattgtgcatacaacaatggcagttccaagttcaattaccttaaaattttcaatactc 188  Q
    ||||||||||||||||||||   |||||||||||||||||| |||||| ||||||| |||||||    
T  7116870 tgtaggcattgtgcatacaa---tggcagttccaagttcaaatacctt-aaattttaaatactc 7116811  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 7110421 - 7110376
Alignment:
Q  163 caattaccttaaaattttcaatactcataatcacactacttgcatt 208  Q
    |||||| |||||| |||||||||||| |||||| ||||||||||||    
T  7110421 caattatcttaaagttttcaatactcttaatcatactacttgcatt 7110376  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 120 - 233
Target Start/End: Complemental strand, 596526 - 596413
Alignment:
Q  120 agtcttgtaggcattgtgcatacaacaatggcagttccaagttcaattaccttaaaattttcaatactcataatcacactacttgcatttgaggctagtg 219  Q
    |||||||| ||||| ||||||||||||||||||||||||||| |||||||||| ||||| || |||||| |||||| |||| |  ||||||| ||||| |    
T  596526 agtcttgttggcatggtgcatacaacaatggcagttccaagtacaattaccttcaaattatcgatactcctaatcatactattctcatttgaagctagag 596427  T
Q  220 atactatagctatt 233  Q
    | ||||||||||||    
T  596426 aaactatagctatt 596413  T

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Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 214
Target Start/End: Original strand, 249926 - 250010
Alignment:
Q  130 gcattgtgcatacaacaatggcagttccaagttcaattaccttaaaattttcaatactcataatcacactacttgcatttgaggc 214  Q
    |||||||||||||||||||||||| | |||||||| || |||||||||| |||||| |  | || | | ||||||||||||||||    
T  249926 gcattgtgcatacaacaatggcagcttcaagttcagttgccttaaaattctcaatattgctgattatattacttgcatttgaggc 250010  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 27153243 - 27153331
Alignment:
Q  101 tataaattaatatt-gtgcaagtcttgtaggcattgtgcatacaacaatggcagttccaagttcaattaccttaaaattttcaatactc 188  Q
    |||||||||| ||| ||| |||| ||||||||||||  | ||||||||||||||   ||| | | |||| |||||||||||||||||||    
T  27153243 tataaattaagattagtgtaagttttgtaggcattgcacttacaacaatggcagcatcaaatccgattatcttaaaattttcaatactc 27153331  T

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