View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6397_low_4 (Length: 206)

Name: NF6397_low_4
Description: NF6397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6397_low_4
NF6397_low_4
[»] chr4 (3 HSPs)
chr4 (13-202)||(5444282-5444458)
chr4 (98-168)||(55850269-55850339)
chr4 (104-165)||(11814703-11814764)
[»] chr1 (5 HSPs)
chr1 (30-202)||(18703459-18703619)
chr1 (94-202)||(9906305-9906413)
chr1 (30-109)||(9906207-9906288)
chr1 (98-168)||(35267992-35268062)
chr1 (11-53)||(35267856-35267898)
[»] chr8 (5 HSPs)
chr8 (11-109)||(26175084-26175185)
chr8 (98-202)||(26174961-26175066)
chr8 (94-202)||(7275632-7275740)
chr8 (11-109)||(7275515-7275615)
chr8 (11-53)||(4677502-4677544)
[»] scaffold1412 (2 HSPs)
scaffold1412 (100-202)||(275-377)
scaffold1412 (30-92)||(136-198)
[»] scaffold0001 (2 HSPs)
scaffold0001 (100-202)||(145134-145236)
scaffold0001 (30-109)||(145034-145114)
[»] chr7 (6 HSPs)
chr7 (98-202)||(34512364-34512468)
chr7 (94-202)||(41832148-41832256)
chr7 (11-109)||(41832273-41832373)
chr7 (30-92)||(34512509-34512571)
chr7 (13-186)||(7736887-7737047)
chr7 (126-202)||(7734856-7734931)
[»] chr6 (2 HSPs)
chr6 (98-197)||(6823545-6823644)
chr6 (30-92)||(6823408-6823470)
[»] chr5 (6 HSPs)
chr5 (98-202)||(35305108-35305212)
chr5 (94-202)||(21256162-21256270)
chr5 (13-92)||(41949737-41949816)
chr5 (30-109)||(35305005-35305087)
chr5 (30-92)||(21256306-21256368)
chr5 (11-53)||(17823249-17823291)
[»] chr2 (5 HSPs)
chr2 (11-109)||(24039126-24039226)
chr2 (94-202)||(24039001-24039109)
chr2 (11-109)||(31269832-31269932)
chr2 (94-202)||(31269949-31270057)
chr2 (16-53)||(36316618-36316655)
[»] scaffold0525 (2 HSPs)
scaffold0525 (94-202)||(6410-6518)
scaffold0525 (11-92)||(6293-6374)
[»] chr3 (4 HSPs)
chr3 (13-122)||(4607089-4607203)
chr3 (98-202)||(42657292-42657395)
chr3 (30-92)||(42656532-42656594)
chr3 (101-165)||(10745186-10745250)
[»] scaffold0263 (1 HSPs)
scaffold0263 (13-92)||(22585-22664)


Alignment Details
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 5444458 - 5444282
Alignment:
Q  13 catcaacaaagccaattaaggcacaacgcttaaccatcaagagttttcaataactcaagacagaagcacaagaagaagaaaaacgacgcttaaccattca 112  Q
    ||||||||||||||   ||||||||||||||||||||||||||| |||||| |||||||| |||||||||| ||            ||||||||||||||    
T  5444458 catcaacaaagccataaaaggcacaacgcttaaccatcaagagtgttcaatcactcaagatagaagcacaataa------------cgcttaaccattca 5444371  T
Q  113 tgacggaagcttatcaacatggctaatccatcatgaacagaagcacaagacaagaaaaacaaggatatccaaaaacaatgatgatgtcca 202  Q
    |||||||||| ||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||| ||||    
T  5444370 tgacggaagcgtatcaacatggctgatccatcatgaacagaagcagaagacaag-aaaacaaggatatccaaaatcaatgatgatatcca 5444282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 55850269 - 55850339
Alignment:
Q  98 acgcttaaccattcatgacggaagcttatcaacatggctaatccatcatgaacagaagcacaagacaagaa 168  Q
    |||||||||||||||||| |||||| |||||||||| || | |||||||||||||||||||||||||||||    
T  55850269 acgcttaaccattcatgatggaagcatatcaacatgtcttaaccatcatgaacagaagcacaagacaagaa 55850339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 11814764 - 11814703
Alignment:
Q  104 aaccattcatgacggaagcttatcaacatggctaatccatcatgaacagaagcacaagacaa 165  Q
    |||||||||||||| |||| ||||||||||||| | ||||||||||||||||||||||||||    
T  11814764 aaccattcatgacgaaagcctatcaacatggcttaaccatcatgaacagaagcacaagacaa 11814703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 4e-40; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 30 - 202
Target Start/End: Original strand, 18703459 - 18703619
Alignment:
Q  30 aaggcacaacgcttaaccatcaagagttttcaataactcaagacagaagcacaagaagaagaaaaacgacgcttaaccattcatgacggaagcttatcaa 129  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||            ||||||||||||||||||||| ||||||||||||    
T  18703459 aaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcacaa------------cgacgcttaaccattcatgacagaagcttatcaa 18703546  T
Q  130 catggctaatccatcatgaacagaagcacaagacaagaaaaacaaggatatccaaaaacaatgatgatgtcca 202  Q
    ||| ||| | ||||||||||||||| ||||||||||||| |  || ||||||||||| |||||||||| ||||    
T  18703547 catagcttaaccatcatgaacagaaacacaagacaagaagagtaaagatatccaaaatcaatgatgatatcca 18703619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 9906305 - 9906413
Alignment:
Q  94 aacgacgcttaaccattcatgacggaagcttatcaacatggctaatccatcatgaacagaagcacaagacaagaaaaacaaggatatccaaaaacaatga 193  Q
    ||||||||||||||||| ||||| ||||||||||||||| ||| | ||||||||||||||||||||||||||||| |  |||||||||||||| ||||||    
T  9906305 aacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccatcatgaacagaagcacaagacaagaagagtaaggatatccaaaatcaatga 9906404  T
Q  194 tgatgtcca 202  Q
    |||| ||||    
T  9906405 tgatatcca 9906413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 9906207 - 9906288
Alignment:
Q  30 aaggcacaacgcttaaccatcaagagttttcaataactcaagacagaagcacaagaagaaga--aaaacgacgcttaaccat 109  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||  ||||||||||||||||||    
T  9906207 aaggcacaacgcttaaccatcaagagttctcaataactcaagacaggagcacaagaagaagaagaaaacgacgcttaaccat 9906288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 35267992 - 35268062
Alignment:
Q  98 acgcttaaccattcatgacggaagcttatcaacatggctaatccatcatgaacagaagcacaagacaagaa 168  Q
    ||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||| |||||||    
T  35267992 acgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacacaagaa 35268062  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 35267856 - 35267898
Alignment:
Q  11 atcatcaacaaagccaattaaggcacaacgcttaaccatcaag 53  Q
    ||||||||||| ||||||||||||||||| |||||||| ||||    
T  35267856 atcatcaacaatgccaattaaggcacaacacttaaccaccaag 35267898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 26175185 - 26175084
Alignment:
Q  11 atcatcaacaaagccaattaaggcacaacgcttaaccatcaagagttttcaataactcaagacagaagcacaagaagaagaa---aaacgacgcttaacc 107  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||| |||||||    
T  26175185 atcatcaacaaagccaattaaggcaccacgcttaaccatcaagagttttcaataactcaagacagaagcacaagaagaagaagagaaacgacacttaacc 26175086  T
Q  108 at 109  Q
    ||    
T  26175085 at 26175084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 98 - 202
Target Start/End: Complemental strand, 26175066 - 26174961
Alignment:
Q  98 acgcttaaccattcatgacggaagcttatcaacatggctaatccatcatgaacagaagcacaagacaag-aaaaacaaggatatccaaaaacaatgatga 196  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||    
T  26175066 acgcttaaccattcatgacgaaagcttatcaacatggctgatccatcatgaacagaagcacaaaacaagaaaaaacaaggatatccaaaatcaatgatga 26174967  T
Q  197 tgtcca 202  Q
    | ||||    
T  26174966 tatcca 26174961  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 7275632 - 7275740
Alignment:
Q  94 aacgacgcttaaccattcatgacggaagcttatcaacatggctaatccatcatgaacagaagcacaagacaagaaaaacaaggatatccaaaaacaatga 193  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| | ||||||||||||||||||||||||||||| |  ||||||||| |||| ||||||    
T  7275632 aacgacgcttaaccattcatgacagaagcttatcaacatagcttaaccatcatgaacagaagcacaagacaagaagagtaaggatatctaaaatcaatga 7275731  T
Q  194 tgatgtcca 202  Q
    |||| ||||    
T  7275732 tgatctcca 7275740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 7275515 - 7275615
Alignment:
Q  11 atcatcaacaaagccaattaaggcacaacgcttaaccatcaagagttttcaataactcaagacagaagcacaagaagaaga--aaaacgacgcttaacca 108  Q
    |||||||||||||||    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||  |||| ||||||||||||    
T  7275515 atcatcaacaaagccttaaaaggcacaatgcttaaccatcaagagttctcaataactcaagacagaagcacaagaagaagaagaaaatgacgcttaacca 7275614  T
Q  109 t 109  Q
    |    
T  7275615 t 7275615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 4677544 - 4677502
Alignment:
Q  11 atcatcaacaaagccaattaaggcacaacgcttaaccatcaag 53  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  4677544 atcatcaacaaagccaattaaggcacaacgcttaaccaccaag 4677502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1412 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: scaffold1412
Description:

Target: scaffold1412; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 100 - 202
Target Start/End: Original strand, 275 - 377
Alignment:
Q  100 gcttaaccattcatgacggaagcttatcaacatggctaatccatcatgaacagaagcacaagacaagaaaaacaaggatatccaaaaacaatgatgatgt 199  Q
    ||||||||||||||||| ||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  275 gcttaaccattcatgacagaagcttatcaacatagcttaaccatcatgaacagaagcacaagacaagaaaaacaaggatatccaacaacaatgatgatat 374  T
Q  200 cca 202  Q
    |||    
T  375 cca 377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1412; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 136 - 198
Alignment:
Q  30 aaggcacaacgcttaaccatcaagagttttcaataactcaagacagaagcacaagaagaagaa 92  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  136 aaggcacaacgcttaaccatcaagagttttccataactcaagacagaagcacaagaagaagaa 198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 100 - 202
Target Start/End: Original strand, 145134 - 145236
Alignment:
Q  100 gcttaaccattcatgacggaagcttatcaacatggctaatccatcatgaacagaagcacaagacaagaaaaacaaggatatccaaaaacaatgatgatgt 199  Q
    ||||||||||||||||| ||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  145134 gcttaaccattcatgacagaagcttatcaacatagcttaaccatcatgaacagaagcacaagacaagaaaaacaaggatatccaacaacaatgatgatat 145233  T
Q  200 cca 202  Q
    |||    
T  145234 cca 145236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 145034 - 145114
Alignment:
Q  30 aaggcacaacgcttaaccatcaagagttttcaataactcaagacagaagcacaagaagaag-aaaaacgacgcttaaccat 109  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| |||||||||||||||||||    
T  145034 aaggcacaacgcttaaccatcaagagttttccataactcaagacagaagaagaagaagaagaaaaaacgacgcttaaccat 145114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 6e-36; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 98 - 202
Target Start/End: Complemental strand, 34512468 - 34512364
Alignment:
Q  98 acgcttaaccattcatgacggaagcttatcaacatggctaatccatcatgaacagaagcacaagacaagaaaaacaaggatatccaaaaacaatgatgat 197  Q
    ||||||||||||||||||| ||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34512468 acgcttaaccattcatgacagaagcttattaacatagcttaaccatcatgaacagaagcacaagacaagaaaaacaaggatatccaaaatcaatgatgat 34512369  T
Q  198 gtcca 202  Q
     ||||    
T  34512368 atcca 34512364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 41832256 - 41832148
Alignment:
Q  94 aacgacgcttaaccattcatgacggaagcttatcaacatggctaatccatcatgaacagaagcacaagacaagaaaaacaaggatatccaaaaacaatga 193  Q
    ||||||||||||||||| ||||| ||||||||||||||| ||| | ||||||||||||||||||||||||||||| |  |||||||||||||| ||||||    
T  41832256 aacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccatcatgaacagaagcacaagacaagaagagtaaggatatccaaaatcaatga 41832157  T
Q  194 tgatgtcca 202  Q
    |||| ||||    
T  41832156 tgatatcca 41832148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 41832373 - 41832273
Alignment:
Q  11 atcatcaacaaagccaattaaggcacaacgcttaaccatcaagagttttcaataactcaagacagaagcacaagaagaaga--aaaacgacgcttaacca 108  Q
    |||||||||||||||    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||  |||||||||||||||||    
T  41832373 atcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacaggagcacaagaagaagaagaaaacgacgcttaacca 41832274  T
Q  109 t 109  Q
    |    
T  41832273 t 41832273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 34512571 - 34512509
Alignment:
Q  30 aaggcacaacgcttaaccatcaagagttttcaataactcaagacagaagcacaagaagaagaa 92  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34512571 aaggcataacgcttaaccatcaagagttttcaataactcaagacagaagcacaagaagaagaa 34512509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 7737047 - 7736887
Alignment:
Q  13 catcaacaaagccaattaaggcacaacgcttaaccatcaagagttttcaataactcaagacagaagcacaagaagaagaaaaacgacgcttaaccattca 112  Q
    |||| ||||||||| | |||||||||| ||||||||||||||||||||||| |||||||| |||||||||| |            || ||||||| ||||    
T  7737047 catccacaaagccattgaaggcacaacacttaaccatcaagagttttcaatcactcaagatagaagcacaata------------actcttaaccgttca 7736960  T
Q  113 tgacggaagcttatcaacatggctaatccatcatgaacagaagcacaagacaagaaaaacaaggatatccaaaa 186  Q
    |||  |||||||||||| ||| || | |||||||||||| ||||| || ||||| ||||||| |||||||||||    
T  7736959 tgatagaagcttatcaatatgactgaaccatcatgaacaaaagcataatacaag-aaaacaatgatatccaaaa 7736887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 7734931 - 7734856
Alignment:
Q  126 tcaacatggctaatccatcatgaacagaagcacaagacaagaaaaacaaggatatccaaaaacaatgatgatgtcca 202  Q
    |||||||| || | ||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||| ||||    
T  7734931 tcaacatgactgaaccatcatgaacagaagcacaagacaag-aaaacaatgatatccaaaatcaatgatgatatcca 7734856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 6823545 - 6823644
Alignment:
Q  98 acgcttaaccattcatgacggaagcttatcaacatggctaatccatcatgaacagaagcacaagacaagaaaaacaaggatatccaaaaacaatgatgat 197  Q
    ||||||||||||||||| | ||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6823545 acgcttaaccattcatgccagaagcttatcaacatagcttaaccatcatgaacagaagcacaagacaagaaaaacaaggatatccaacaacaatgatgat 6823644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 6823408 - 6823470
Alignment:
Q  30 aaggcacaacgcttaaccatcaagagttttcaataactcaagacagaagcacaagaagaagaa 92  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6823408 aaggcacaacgcttaaccatcaagagttttccataactcaagacagaagcacaagaagaagaa 6823470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 98 - 202
Target Start/End: Original strand, 35305108 - 35305212
Alignment:
Q  98 acgcttaaccattcatgacggaagcttatcaacatggctaatccatcatgaacagaagcacaagacaagaaaaacaaggatatccaaaaacaatgatgat 197  Q
    ||||||||| ||||||||||||||| |||||||||| || | |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  35305108 acgcttaactattcatgacggaagcatatcaacatgtcttaaccatcatgaacagaagcacaagacaagaaatacaaggatatccaaaatcaatgatgat 35305207  T
Q  198 gtcca 202  Q
     ||||    
T  35305208 atcca 35305212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 21256270 - 21256162
Alignment:
Q  94 aacgacgcttaaccattcatgacggaagcttatcaacatggctaatccatcatgaacagaagcacaagacaagaaaaacaaggatatccaaaaacaatga 193  Q
    ||||||||||||||||| ||||| ||||||||||||||| ||| | ||||||||||||||||||||||||||||| |  |||||||||||||| ||||||    
T  21256270 aacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccatcatgaacagaagcacaagacaagaagagtaaggatatccaaaatcaatga 21256171  T
Q  194 tgatgtcca 202  Q
    |||| ||||    
T  21256170 tgatatcca 21256162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 41949737 - 41949816
Alignment:
Q  13 catcaacaaagccaattaaggcacaacgcttaaccatcaagagttttcaataactcaagacagaagcacaagaagaagaa 92  Q
    |||| |||||||||   |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41949737 catcgacaaagccataaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcacaagaagaagaa 41949816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 35305005 - 35305087
Alignment:
Q  30 aaggcacaacgcttaaccatcaagagttttcaataactcaagacagaagcacaagaag---aagaaaaacgacgcttaaccat 109  Q
    |||||||||||||||||||||||||||  ||||| |||||||| ||||||||||||||   ||||||||||||||||||||||    
T  35305005 aaggcacaacgcttaaccatcaagagtagtcaattactcaagatagaagcacaagaagaaaaagaaaaacgacgcttaaccat 35305087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 21256368 - 21256306
Alignment:
Q  30 aaggcacaacgcttaaccatcaagagttttcaataactcaagacagaagcacaagaagaagaa 92  Q
    |||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||    
T  21256368 aaggcacaacgcttaaccatcaagagttctcaataactaaagacaaaagcacaagaagaagaa 21256306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 17823291 - 17823249
Alignment:
Q  11 atcatcaacaaagccaattaaggcacaacgcttaaccatcaag 53  Q
    ||||||||||||||| |||||||||||||||||||||| ||||    
T  17823291 atcatcaacaaagccgattaaggcacaacgcttaaccaccaag 17823249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 9e-32; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 24039226 - 24039126
Alignment:
Q  11 atcatcaacaaagccaattaaggcacaacgcttaaccatcaagagttttcaataactcaagacagaagcacaagaagaaga--aaaacgacgcttaacca 108  Q
    |||||||||||||||    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  24039226 atcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcacaagaagaagaagaaaacgacgcttaacca 24039127  T
Q  109 t 109  Q
    |    
T  24039126 t 24039126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 24039109 - 24039001
Alignment:
Q  94 aacgacgcttaaccattcatgacggaagcttatcaacatggctaatccatcatgaacagaagcacaagacaagaaaaacaaggatatccaaaaacaatga 193  Q
    ||||||||||||||||| ||||| ||||||||||||||| ||| | ||||||||||||||||||||||||||||| |  |||||||||||||| ||||||    
T  24039109 aacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccatcatgaacagaagcacaagacaagaagagtaaggatatccaaaatcaatga 24039010  T
Q  194 tgatgtcca 202  Q
    |||| ||||    
T  24039009 tgatatcca 24039001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 31269832 - 31269932
Alignment:
Q  11 atcatcaacaaagccaattaaggcacaacgcttaaccatcaagagttttcaataactcaagacagaagcacaagaagaaga--aaaacgacgcttaacca 108  Q
    |||||||||||||||    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  31269832 atcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagcacaaaaagaagaagaaaacgacgcttaacca 31269931  T
Q  109 t 109  Q
    |    
T  31269932 t 31269932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 31269949 - 31270057
Alignment:
Q  94 aacgacgcttaaccattcatgacggaagcttatcaacatggctaatccatcatgaacagaagcacaagacaagaaaaacaaggatatccaaaaacaatga 193  Q
    ||||||||||||||||| |||||  |||||||||||||| ||| | ||||||||||||||||||||||||||||| |  |||||||||||||| ||||||    
T  31269949 aacgacgcttaaccattaatgacaaaagcttatcaacatagcttaaccatcatgaacagaagcacaagacaagaagagtaaggatatccaaaatcaatga 31270048  T
Q  194 tgatgtcca 202  Q
    |||| ||||    
T  31270049 tgatatcca 31270057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 36316618 - 36316655
Alignment:
Q  16 caacaaagccaattaaggcacaacgcttaaccatcaag 53  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  36316618 caacaaagccaattaaggcacaacgcttaaccaccaag 36316655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 6410 - 6518
Alignment:
Q  94 aacgacgcttaaccattcatgacggaagcttatcaacatggctaatccatcatgaacagaagcacaagacaagaaaaacaaggatatccaaaaacaatga 193  Q
    |||||||||||||||||||||||  |||||||||||||| ||| | ||||||||||||||||||||||||||||| |  |||||||||||||| ||||||    
T  6410 aacgacgcttaaccattcatgacaaaagcttatcaacatagcttaaccatcatgaacagaagcacaagacaagaagagtaaggatatccaaaatcaatga 6509  T
Q  194 tgatgtcca 202  Q
    |||| ||||    
T  6510 tgatatcca 6518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 6293 - 6374
Alignment:
Q  11 atcatcaacaaagccaattaaggcacaacgcttaaccatcaagagttttcaataactcaagacagaagcacaagaagaagaa 92  Q
    |||||||||||||||    |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  6293 atcatcaacaaagccttaaaaggcacaacgcttaaccatcaagagttctcaataactcaagacagaagtacaagaagaagaa 6374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 4607203 - 4607089
Alignment:
Q  13 catcaacaaagccaattaaggcacaacgcttaaccatcaagagttttcaataactcaagacagaagcacaagaagaaga-----aaaacgacgcttaacc 107  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||     |||| |||||||||||    
T  4607203 catcgacaaagccaattagggcacaacgcttaaccatcaagagttctcaataactcaagacagaaacacaagaagaagaagaagaaaatgacgcttaacc 4607104  T
Q  108 attcatgacggaagc 122  Q
    || |||||| |||||    
T  4607103 atccatgacagaagc 4607089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 98 - 202
Target Start/End: Original strand, 42657292 - 42657395
Alignment:
Q  98 acgcttaaccattcatgacggaagcttatcaacatggctaatccatcatgaacagaagcacaagacaagaaaaacaaggatatccaaaaacaatgatgat 197  Q
    ||||||||||||||||||| ||||| ||||||||| ||| | |||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||    
T  42657292 acgcttaaccattcatgacagaagcctatcaacatagcttaaccatcatgaacagaagtacaagacaag-aaaacaaggatatccaaaatcaatgatgat 42657390  T
Q  198 gtcca 202  Q
     ||||    
T  42657391 atcca 42657395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 42656532 - 42656594
Alignment:
Q  30 aaggcacaacgcttaaccatcaagagttttcaataactcaagacagaagcacaagaagaagaa 92  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42656532 aaggcacaacacttaaccatcaagagttctcaataactcaagacagaagcacaagaagaagaa 42656594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 10745250 - 10745186
Alignment:
Q  101 cttaaccattcatgacggaagcttatcaacatggctaatccatcatgaacagaagcacaagacaa 165  Q
    |||||||||||||||| ||||||||||||||||||| | ||||||||||||||| ||||| ||||    
T  10745250 cttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaatcacaatacaa 10745186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 22664 - 22585
Alignment:
Q  13 catcaacaaagccaattaaggcacaacgcttaaccatcaagagttttcaataactcaagacagaagcacaagaagaagaa 92  Q
    |||| |||||||||   ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22664 catcgacaaagccataaaagacacaacgcttaaccatcaagagttctcaataactcaagacagaagcacaagaagaagaa 22585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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