View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6398_high_2 (Length: 317)
Name: NF6398_high_2
Description: NF6398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6398_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 9 - 299
Target Start/End: Original strand, 26287334 - 26287622
Alignment:
| Q |
9 |
attattctcattaccttctttcacctcaggaatggtagtttcaagtgaaacatccttaggtgtttcaacctttgagattggtttttcattagctaatgat |
108 |
Q |
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| T |
26287334 |
attattctcattaccttctttcacctcaggaatggtagtttcaagtgaaacatccttaggtgtttcaacctttgagattggtttttcattagctaatgat |
26287433 |
T |
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| Q |
109 |
tgttgtttccttgttcttcttgacatggttatgtcatagtggcgtttcgccgaggattgaaactccatttgctannnnnnnnnnnnnnnatgaaatttgc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26287434 |
tgttgtttccttgttcttcttgacatggttatgtcatagtggcgtttcgccgaggattgaaactccatttgcta--tgtgtgtgtgtgtatgaaatttgc |
26287531 |
T |
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| Q |
209 |
tttgtttttgtgtaaacctttcaaagagaagtcatggttgtacctattagatagcatgaaaatgttcactttcttaaagagcaaaccaaag |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26287532 |
tttgtttttgtgtaaacctttcaaagagaagtcatggttgtacctattagatagcatgaaaatgttcactttcttaaagagcaaaccaaag |
26287622 |
T |
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