View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6398_high_6 (Length: 245)
Name: NF6398_high_6
Description: NF6398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6398_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 22756585 - 22756352
Alignment:
| Q |
7 |
gcttttgaaatcatgtctgttatgaaagctgctgcaaacgttacagaacctttcagacagaaacacactctctctcttttgtaaggaaacggcgtttgtt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22756585 |
gcttttgaaatcatgtctgttatgaaagctgctgcaaacgttacagaacctttcagacagaaacacactctctctcttttgtaaggaaacggcgtttgtt |
22756486 |
T |
|
| Q |
107 |
ggaatctgtgaatcacaatacataacagcttctttggtttgtgtccattttataatacaaaagactatgtcttcttccttcttttgtttttcaatatttt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22756485 |
ggaatctgtgaatcacaatacataacagcttctttggtttgtgtccattttataatacaaaagactatgtcttcttccttcttttgttttacaatatttt |
22756386 |
T |
|
| Q |
207 |
attcttagtgttgtgtcacaactatgtgtctctg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
22756385 |
attcttagtgttgtgtcacaactatgtgtttctg |
22756352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University