View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6398_high_7 (Length: 244)
Name: NF6398_high_7
Description: NF6398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6398_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 21432688 - 21432466
Alignment:
| Q |
1 |
atacaaaaatctccatatttaaatcatgtagaatagttgggttgtgtgtatgataggatacaacaagagttcaaaggagaaaagnnnnnnnncgaataaa |
100 |
Q |
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| T |
21432688 |
atacaaaaatctccatatttaaatcatgtagaatagttggattgtgtgtatgataggatacaac--gagttcaaaggagaagaaaaaaaaaacgaataaa |
21432591 |
T |
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| Q |
101 |
aataggatttatagtgatatttgcaacacctgagagcaaaatcgatacaatagggttaaatttgcaagttcccaatatactctcccaagaatgatacaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21432590 |
aataggatttatagtgatatttgcaacacctgagagcaaaatcgatacaatagggttaaatttgcaagttccca--atactctcccaagaatgatacaat |
21432493 |
T |
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| Q |
201 |
agtgctaatttctagagtgttccaatt |
227 |
Q |
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|||||||| |||||||||||||||||| |
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| T |
21432492 |
agtgctaagttctagagtgttccaatt |
21432466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 6 - 154
Target Start/End: Original strand, 27099746 - 27099893
Alignment:
| Q |
6 |
aaaatctccatatttaaatcatgtagaatagttgggttgtgtgtatgataggatacaacaagagttcaaaggagaaaagnnnnnnnncgaataaaaatag |
105 |
Q |
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| T |
27099746 |
aaaatctccatatttaaatcatgtagaatagttggattgtgtgtatgataggatacaacaagcgttcaaaggagaaga-taaaaaattgaataaaaatag |
27099844 |
T |
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| Q |
106 |
gatttatagtgatatttgcaacacctgagagcaaaatcgatacaatagg |
154 |
Q |
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| T |
27099845 |
gatttatagtgatatttgcaagacctgagagcaaaatcaatacaatagg |
27099893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 27151498 - 27151439
Alignment:
| Q |
1 |
atacaaaaatctccatatttaaatcatgtagaatagttgggttgtgtgtatgataggata |
60 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27151498 |
atacaaaaatctccatatttaaatcatgtagaatagttggattgtgtgtatgataggata |
27151439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 27027884 - 27027839
Alignment:
| Q |
32 |
aatagttgggttgtgtgtatgataggatacaacaagagttcaaagg |
77 |
Q |
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| T |
27027884 |
aatagttgggttgtgtgtatgataggatacaacaagaattcaaagg |
27027839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 26988564 - 26988519
Alignment:
| Q |
32 |
aatagttgggttgtgtgtatgataggatacaacaagagttcaaagg |
77 |
Q |
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| T |
26988564 |
aatagttgggttgtgtatatgataggatacaacaagaattcaaagg |
26988519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 27076682 - 27076727
Alignment:
| Q |
32 |
aatagttgggttgtgtgtatgataggatacaacaagagttcaaagg |
77 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
27076682 |
aataattgggttgtgtgtatgataggatacaacaagaattcaaagg |
27076727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 27099905 - 27099951
Alignment:
| Q |
181 |
tctcccaagaatgatacaatagtgctaatttctagagtgttccaatt |
227 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||| |||||| |
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| T |
27099905 |
tctcccaagaatgatacaatagggctaaattctagagtgtcccaatt |
27099951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 142
Target Start/End: Complemental strand, 27151430 - 27151383
Alignment:
| Q |
95 |
aataaaaataggatttatagtgatatttgcaacacctgagagcaaaat |
142 |
Q |
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| T |
27151430 |
aataaaaataggatttatagtaatatttccaagacctgagagtaaaat |
27151383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 34690640 - 34690595
Alignment:
| Q |
32 |
aatagttgggttgtgtgtatgataggatacaacaagagttcaaagg |
77 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
34690640 |
aatagttgggttgtgtatatgataggatacaacaagaattcaaagg |
34690595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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