View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6398_high_8 (Length: 239)
Name: NF6398_high_8
Description: NF6398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6398_high_8 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 84 - 239
Target Start/End: Complemental strand, 22756863 - 22756708
Alignment:
| Q |
84 |
ttgttccatgtgtccttgaggaaaatagaaaactctttgtccagcacgaggaacttcaacatgaggaccagcacaagccttccataactgttcatagagt |
183 |
Q |
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| T |
22756863 |
ttgttccatgtgtccttgaggaaaatagaaaactctttgtccagcacgaggaacttcaacatgaggaccagcacaagccttccataactgttcatagagt |
22756764 |
T |
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| Q |
184 |
tcatcttcttcaccattattcatcatcattgcaagtcaaaaaccttttcacttttt |
239 |
Q |
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| T |
22756763 |
tcatcttcttcaccattattcatcatcattgcaagtcaaaaaccttttcacttttt |
22756708 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 7077583 - 7077642
Alignment:
| Q |
84 |
ttgttccatgtgtccttgaggaaaatagaaaactctttgtccagcacgaggaacttcaac |
143 |
Q |
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| T |
7077583 |
ttgttccatgtgtccttgtgggaaatagaaaacactttgaccaacacaaggaacatcaac |
7077642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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