View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6398_low_1 (Length: 411)
Name: NF6398_low_1
Description: NF6398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6398_low_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 6227496 - 6227086
Alignment:
| Q |
1 |
ttcaactctaaggatgaaattgtggtagtcgatcccattgagtctttcaatagcactctgagcagcttccttggtggcaaagttaacaaaggcaaaacgg |
100 |
Q |
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| T |
6227496 |
ttcaactctaaggatgaaattgtggtagtcgatcccattgagtctttcaatagcactctgagcagcttccttggtggcaaagttaacaaaggcaaaacgg |
6227397 |
T |
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| Q |
101 |
ccactaaggccagtgtgatgagcaatagcaacatcggcaccgatgacacgaccaaaaggctggaaaagttgaagcaaatcatggttccttgtctcgggcg |
200 |
Q |
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| T |
6227396 |
ccactaaggccagtgtgttgagcaatagcaatatcggcaccgatgacatgaccaaaaggctggaaaagttgaagcaaatcatggttccttgtctcgggtg |
6227297 |
T |
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| Q |
201 |
ggaggttgcctacgactaccagaaaagaattcttgttcttgtcatcggaggacagagtagtcatctctttcacaaaagccttcaggtatgagggtacaaa |
300 |
Q |
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| T |
6227296 |
ggaggttgcctcctactaccagaaaagaattcttgttcttgtcatcggaggacagagtagtcatctctttcacaaaagccttcaggtatggaggtacaaa |
6227197 |
T |
|
| Q |
301 |
catacccgcaatcggaggtgtataatcaacacgaataactggatgataaacagtatgacaacaacgtgttggacaaggtaatggaaactcaagctcattg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6227196 |
catacccgcaatcggaggtgtataatcaacacgaataactggatgataaacagtatgacaacaacgtgttggacaaggtaatggaaactcaagctcattg |
6227097 |
T |
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| Q |
401 |
ccgaaacctgt |
411 |
Q |
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| T |
6227096 |
ccgaaacctgt |
6227086 |
T |
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