View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6398_low_11 (Length: 220)
Name: NF6398_low_11
Description: NF6398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6398_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 30292297 - 30292492
Alignment:
| Q |
1 |
aagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaactttttaatgcttattatgcttgttcgctctaagaagctatagctcata |
100 |
Q |
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| T |
30292297 |
aagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaacgttttaatgcttattatgcttgtatgctctaag---------ctcata |
30292387 |
T |
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| Q |
101 |
gtgagcaatgaataaaacggcattagcttgtaactataactagagttccacctttctactatgaataaattaatcaagaacaagttttgtgccacctcct |
200 |
Q |
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| T |
30292388 |
gtgagcaatgaataaaacggcattagcttgtaactataactagagttccactttcctactatgaataaattaatcaagaacaagttttgtgccacctcct |
30292487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 30315797 - 30316003
Alignment:
| Q |
1 |
aagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaactttttaatgctta--------ttatgcttgttcgctctaagaagctat |
92 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||| | |||||| ||| ||| |||| | |||| |
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| T |
30315797 |
aagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggagctttttaatgagtgatcaaatgttatgcatgtatgctgtaaggaactat |
30315896 |
T |
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| Q |
93 |
agctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccacc-tttctactatgaataaattaatcaagaacaagttttgtg |
191 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||| | |||||||||||||||| ||| |||||||||||||||||||||||| |||||||||| |
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| T |
30315897 |
agctcatagtgagcaaagaataaaacggcattatcttgtaattgtaactagagttccaccttttgtactatgaataaattaatcaagaataagttttgtg |
30315996 |
T |
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| Q |
192 |
ccacctc |
198 |
Q |
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||||||| |
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| T |
30315997 |
ccacctc |
30316003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 30304931 - 30305136
Alignment:
| Q |
1 |
aagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaactttttaatgctt--------attatgcttgttcgctctaagaagctat |
92 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||| | ||||||| || | | || | |||||| |
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| T |
30304931 |
aagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggagctttttaatgagtgatcaaatattatgcaagtatgatatatggagctat |
30305030 |
T |
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| Q |
93 |
agctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccacctttctactatgaataaattaatcaagaacaagttttgtgc |
192 |
Q |
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|||| ||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||| || |
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| T |
30305031 |
agctaataatgagcgatgaataaaacggcattatcttgtaactataactagagttccacctttctactatgaataactgaatcaagaataagttttgagc |
30305130 |
T |
|
| Q |
193 |
cacctc |
198 |
Q |
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|||||| |
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| T |
30305131 |
cacctc |
30305136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 30287263 - 30287469
Alignment:
| Q |
1 |
aagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaactttttaatgctta--------ttatgcttgttcgctctaagaagctat |
92 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||| | |||||| ||| ||| |||| | |||| |
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| T |
30287263 |
aagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggagctttttaatgagtgatcaaatgttatgcatgtatgctgtaaggaactat |
30287362 |
T |
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| Q |
93 |
agctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccacctttctactatgaataaattaatcaagaacaagttttgtgc |
192 |
Q |
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|||||||| |||| || |||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30287363 |
agctcataatgagaaaagaataaaacggcattatcttgtaac------tagagttcctcctttctactatgaataaattaatcaagaataagttttgtgc |
30287456 |
T |
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| Q |
193 |
cacctcctctctg |
205 |
Q |
| |
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| ||||||||||| |
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| T |
30287457 |
ctcctcctctctg |
30287469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 30300139 - 30300338
Alignment:
| Q |
1 |
aagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaactttttaatgctt--------attatgcttgttcgctctaagaagctat |
92 |
Q |
| |
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|||||||||||||||||||| ||||||||| ||| |||||||||| |||| |||||||| | ||||||||||| ||| |||| || || |
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| T |
30300139 |
aagaaggtcgaagccagagacaaagggagcttatatcttcaattttgggagtattttaatgagtgatcaaatattatgcttgtatgctgtaaggagtcat |
30300238 |
T |
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| Q |
93 |
agctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccacctttctactatgaataaattaatcaagaacaagttttgtgc |
192 |
Q |
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||||||||||||||| ||||||||||||| || |||||| ||| |||||||||||||| || |||||||||||||||||||| ||||||||||| |
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| T |
30300239 |
agctcatagtgagcagagaataaaacggcaatatcttgtatcta------gagttccacctttccaccatgaataaattaatcaagaataagttttgtgc |
30300332 |
T |
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