View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6398_low_3 (Length: 274)
Name: NF6398_low_3
Description: NF6398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6398_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 14 - 255
Target Start/End: Original strand, 47500826 - 47501075
Alignment:
| Q |
14 |
gaagtacaaatattactgaacccaaaaacttggaagtagtactgaagtttttaggtagaaatgattaatccgaagttgtgagcatcatgaatgaagcaaa |
113 |
Q |
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| T |
47500826 |
gaagtacaaatattactgaacccaaaaacttggaagcagtactgaagtttttaggtagaa---attaatccgaagttgtgagcatcatgaatgaagcaaa |
47500922 |
T |
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| Q |
114 |
ttcgtacttaaccnnnnnnnaatggaaaacgtacttaactgt---tgcagccaagtgccaacgaattagccggcctttagaacccatac--------aat |
202 |
Q |
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| T |
47500923 |
ttcgtacttaacctttttttgatggaaaacgtacttaactgttgctgcagccaagtgccaacgaattagccggcctttagaacccatacaataaataaat |
47501022 |
T |
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| Q |
203 |
aaataaatagaaacgacaaattgcatgtcctctaccaagtaaaaacataatcg |
255 |
Q |
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| T |
47501023 |
aaataaatagaaacgacaaattgcatgtcctctaccaagtaaaaacataatcg |
47501075 |
T |
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