View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6398_low_4 (Length: 261)
Name: NF6398_low_4
Description: NF6398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6398_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 10381390 - 10381625
Alignment:
| Q |
18 |
gaatataatcgattgctaatgcaacactgcataagccaccgagcaacacattgttgatggaaaacatgcttgcacttggtacgaacaatgtctggtactt |
117 |
Q |
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| T |
10381390 |
gaatataatcgattgctaatgcaacactgcataagccaccgagcaacacattgttgatggaaaacatgcatgcacttggtacgaacaatggctggtactt |
10381489 |
T |
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| Q |
118 |
ctgtttcattgtaaaactccttcaaacaaattgagcattgttccattgaacaagcggtatctgcattgtcctccactttgatcttctccaacgaattcat |
217 |
Q |
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| T |
10381490 |
ctgtttcattgtaaaactccttcaaacaaattgagcattgttccattgaacaagcggtatctgcattgtcgtccactttgatcttctccaacgaattcat |
10381589 |
T |
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| Q |
218 |
aacattcgttacatcatgaaccgtaacattcatctc |
253 |
Q |
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| T |
10381590 |
aacattcgttacatcatgaaccgtaacactcatctc |
10381625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 170
Target Start/End: Original strand, 10429119 - 10429240
Alignment:
| Q |
49 |
taagccaccgagcaacacattgttgatggaaaacatgcttgcacttggtacgaacaatgtctggtacttctgtttcattgtaaaactccttcaaacaaat |
148 |
Q |
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| T |
10429119 |
taagccaccgagcaacacaatgttcatgaaaaaaatgcatacacttggtacgaataatgtgtggtacttctgatccatcacaaaattcctccaaacaaat |
10429218 |
T |
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| Q |
149 |
tgagcattgttccattgaacaa |
170 |
Q |
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| T |
10429219 |
tgaacattgttctcttgaacaa |
10429240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 108
Target Start/End: Original strand, 10396861 - 10396895
Alignment:
| Q |
74 |
atggaaaacatgcttgcacttggtacgaacaatgt |
108 |
Q |
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| T |
10396861 |
atggaaaacatgcatgcacttggtacgaacaatgt |
10396895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 108
Target Start/End: Original strand, 10407081 - 10407115
Alignment:
| Q |
74 |
atggaaaacatgcttgcacttggtacgaacaatgt |
108 |
Q |
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| T |
10407081 |
atggaaaacatgcatgcacttggtacgaacaatgt |
10407115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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