View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6398_low_5 (Length: 251)
Name: NF6398_low_5
Description: NF6398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6398_low_5 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 21432939 - 21432696
Alignment:
| Q |
8 |
cagcacagatggggaaatgcatcaagtaaaacttctataaaatggtgcattggttggcacataccttctagagaatctgtacaggtttttaaatgcattt |
107 |
Q |
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| T |
21432939 |
cagcacagatggggaaatgcattaagtaaaacttctataaaatggtgcattggttggcacataccttctagagaatctgtacaggtttttaaatgcattt |
21432840 |
T |
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| Q |
108 |
cttctgggctcaaacgatgaagagaagtggtatttagcagtgtgtgatctaagtccagaaccaagcaaagctttctacagtttaataaattccgtgtgtg |
207 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21432839 |
cttctgggctcaaacgatgaagggaagtggtatttagcagtgtgtgatctaagtccagaaccaagcaaagctttctacggtttaataaattccgtgtgtg |
21432740 |
T |
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| Q |
208 |
taagctgcgcactctagaaatttcctcctcctgaagtcttagtc |
251 |
Q |
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|||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
21432739 |
taagcttcgcactctagaaatttcctcctcatgaagtcttagtc |
21432696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 47 - 251
Target Start/End: Original strand, 27099529 - 27099733
Alignment:
| Q |
47 |
aaatggtgcattggttggcacataccttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacgatgaagagaagtggtatttagca |
146 |
Q |
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| T |
27099529 |
aaatggtgcattagttggcacataccttctagagaatctgtataggttttcaattgcatttcttttgggttcaaaggatgaagggaagtggtatttatct |
27099628 |
T |
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| Q |
147 |
gtgtgtgatctaagtccagaaccaagcaaagctttctacagtttaataaattccgtgtgtgtaagctgcgcactctagaaatttcctcctcctgaagtct |
246 |
Q |
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| T |
27099629 |
gtgtgtgatctaagtccagaaccaagcaaagctttctacggtttaataaattccgtgtgtgtaagctgcgcactctagaaatttcctcatcatgaagtct |
27099728 |
T |
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| Q |
247 |
tagtc |
251 |
Q |
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||||| |
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| T |
27099729 |
tagtc |
27099733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 27151751 - 27151506
Alignment:
| Q |
9 |
agcacagatggggaaatgcatcaagtaaaacttctataaaatggtgcattggttggcacataccttctagagaatctgtacaggtttttaaatgcatttc |
108 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||| | ||||| |||| |||||||||||||||| || |||||||||||||||| |
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| T |
27151751 |
agcagagatggggaaatgcatcaagtaaaacttttataaaatggtgcattcggtggcatatactttctagagaatctgtatagatttttaaatgcatttc |
27151652 |
T |
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| Q |
109 |
ttct-gggctcaaacgatgaagagaagtggtatttagcagtgtgtgatctaagtccag---aaccaagcaaagctttctacagtttaataaattccgtgt |
204 |
Q |
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|||| ||||||||| ||||||| | |||||||||||||||||||||||||| | |||| ||||||||||||||||||| |||| |||||||| |||| |
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| T |
27151651 |
ttctggggctcaaatgatgaaggggagtggtatttagcagtgtgtgatctaggcccagaataaccaagcaaagctttctatggttt-ataaattctgtgt |
27151553 |
T |
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| Q |
205 |
gtgtaagctgcgcactctagaaatttcctcctcctgaagtcttagtc |
251 |
Q |
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| T |
27151552 |
gtctaagctgcacactctacaaatttcctcatcgtgaagtcttagtc |
27151506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 51 - 233
Target Start/End: Complemental strand, 26988829 - 26988646
Alignment:
| Q |
51 |
ggtgcattggttggcacat-accttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacgatgaagagaagtggtatttagcagtg |
149 |
Q |
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||||||| |||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26988829 |
ggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttcttctgggctcaaacgatgaagggaagtggtatttagcagtg |
26988730 |
T |
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| Q |
150 |
tgtgatctaagtccagaaccaagcaaagctttctacagtttaataaattccgtgtgtgtaagctgcgcactctagaaatttcct |
233 |
Q |
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||||||||||||| |||||||||||||||||||||| |||||||||||| || | ||||||||||||||||||||||| |
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| T |
26988729 |
tgtgatctaagtctagaaccaagcaaagctttctacgatttaataaattcttcacgtctctgctgcgcactctagaaatttcct |
26988646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 69 - 233
Target Start/End: Original strand, 27076449 - 27076613
Alignment:
| Q |
69 |
taccttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacgatgaagagaagtggtatttagcagtgtgtgatctaagtccagaac |
168 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| |
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| T |
27076449 |
taccttctagagaatctgtatgagtttttaaatgcatttcttctgggctcaaacgatgaagggaagtggtatttagcagtgtgtgatctaggtctagaac |
27076548 |
T |
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| Q |
169 |
caagcaaagctttctacagtttaataaattccgtgtgtgtaagctgcgcactctagaaatttcct |
233 |
Q |
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||| ||||||||||||| |||||||||||| || || || |||||||||||||||||||| |
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| T |
27076549 |
caaacaaagctttctacgatttaataaattcttcacgtctatgccgcgcactctagaaatttcct |
27076613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 69 - 199
Target Start/End: Complemental strand, 27028128 - 27027998
Alignment:
| Q |
69 |
taccttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacgatgaagagaagtggtatttagcagtgtgtgatctaagtccagaac |
168 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | |||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
27028128 |
taccttctagagaatctgtatgggtttttaaatgcatttcttctgagctcaaacggtaaagaaaagtggtatttagcagtgtgtgatctaggtccagaac |
27028029 |
T |
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| Q |
169 |
caagcaaagctttctacagtttaataaattc |
199 |
Q |
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||| ||||||||||||| |||||||||||| |
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| T |
27028028 |
caaacaaagctttctacgatttaataaattc |
27027998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 51 - 233
Target Start/End: Complemental strand, 34690905 - 34690722
Alignment:
| Q |
51 |
ggtgcattggttggcacat-accttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacgatgaagagaagtggtatttagcagtg |
149 |
Q |
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||||||| |||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34690905 |
ggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttcttctgggctcaaacgatgaagggaagtggtatttagcagtg |
34690806 |
T |
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| Q |
150 |
tgtgatctaagtccagaaccaagcaaagctttctacagtttaataaattccgtgtgtgtaagctgcgcactctagaaatttcct |
233 |
Q |
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||||||||||||| |||||||||||||||||||||| |||||||||||| || | ||||||||||||||||||||||| |
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| T |
34690805 |
tgtgatctaagtcaagaaccaagcaaagctttctacgatttaataaattcttcacgtctctgctgcgcactctagaaatttcct |
34690722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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