View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6398_low_9 (Length: 234)
Name: NF6398_low_9
Description: NF6398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6398_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 6227540 - 6227735
Alignment:
| Q |
25 |
tggtttatgcatctgtgtacatgtttacgttaaatgatagttgtttcttctttttgcttgcatctgtactatggatccttatgtacttttttgacaacag |
124 |
Q |
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| T |
6227540 |
tggtttatgcatctgtgt----gtttacgttaaatgatagttgtttcttctttttgcttgcatctgtactatggatccttatgtacttttttgacaacag |
6227635 |
T |
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| Q |
125 |
aaatttatc-ttttaagttcagtttattcctttatgttttgaagattcctatttcataccatatatggaaagttcaaacatgtccaatgaagtatatatt |
223 |
Q |
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| T |
6227636 |
aaatttatctttttaagttcagtttattcctttatgttttgaagattcctatttcctaacatatatggaaagttcaaacatgtccaatgaagtatatatt |
6227735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 6223087 - 6223142
Alignment:
| Q |
148 |
tattcctttatgttttgaagattcctatttcataccatatatggaaagttcaaaca |
203 |
Q |
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| T |
6223087 |
tattcctttatgttttgaagattcctatttcctaccatatatggaaaggtcaaaca |
6223142 |
T |
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