View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6399_high_11 (Length: 441)
Name: NF6399_high_11
Description: NF6399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6399_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 16 - 419
Target Start/End: Complemental strand, 38944007 - 38943595
Alignment:
| Q |
16 |
gatgaagtattataactagcttatttgataaatactttaaagtgatttccctaaagtgatgatttcagcttatttgatttatctatttatttataattta |
115 |
Q |
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| T |
38944007 |
gatggagtattataactagcttatttgataaacactttaaaatgatttctctaaagtgatgacttcagcttatttgatttatctatttatttataattta |
38943908 |
T |
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| Q |
116 |
taactagcattcaatttcatggagactt---------ttattttcattttctaccttctagataatgagtttgaataacatgagatagaaatcgaggttg |
206 |
Q |
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| T |
38943907 |
taactagcattgaatttcatggagacttattatatctttgttttcattttctaccttatagataatgagtttgaataacatgagatagaaatcgaggttg |
38943808 |
T |
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| Q |
207 |
ggattagtaaaaatcaaagggaattcacagattttattctctgtctgtttgtgttgagagacttaattttggcaaaattaattcacgtcatgtgttttga |
306 |
Q |
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| T |
38943807 |
ggattagtaaaaatcaaagggaattcacggattttgttctttgcccgtttgtgttgagagatttcattttggcaaatctaatccacgtcatgtattttga |
38943708 |
T |
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| Q |
307 |
atttcatatttgttagtgtagataagtgataaaataatgctgtttttcatattttgaatttcaataactctttcaaaagagaatagccaaattgtttact |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38943707 |
atttcatatttgttagtgtagataagtgataaaataatgttgcttttcatattttgaatttcaataactctttcaaaagagaatagccaaattgttaact |
38943608 |
T |
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| Q |
407 |
gttgaaacaccaa |
419 |
Q |
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| T |
38943607 |
gttgaaacaccaa |
38943595 |
T |
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Back To:
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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 280
Target Start/End: Complemental strand, 49363637 - 49363558
Alignment:
| Q |
200 |
gaggttgggattagtaaaaatcaaagggaattcacagattttattctctgt-ctgtttgtgttgagagacttaattttggca |
280 |
Q |
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| T |
49363637 |
gaggttgggatacgtaaaaatcaaagggaattcacagattt--tgctctgtcctccttgtgttgggagacttaatattggca |
49363558 |
T |
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