View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6399_high_14 (Length: 385)
Name: NF6399_high_14
Description: NF6399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6399_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 17 - 370
Target Start/End: Complemental strand, 5246700 - 5246347
Alignment:
| Q |
17 |
atgaaccagatatataatataaataataactgaagatcactgagcaaggtttacagctgaatatcattgagcttgagcaatagagcttgagaaggtgctt |
116 |
Q |
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| T |
5246700 |
atgaaccagatatataatataaataataactgaagatcactgagcaaggtttacagctgaatatcattgagcttgagcaatagagcttgagaaggtgctt |
5246601 |
T |
|
| Q |
117 |
ctttaatttaggctagagttaaagatgagggttggtaataattgcagcaattgttaatgcatgtggatgttagaaataaaagtcaatataatcctttgaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5246600 |
ctttaatttaggctagagttaaagatgagggttggtaataattgcagcaattgttaatgcatgtggatgttagaaataaaagtcaatataatcctttgaa |
5246501 |
T |
|
| Q |
217 |
gggggagattctctcacaattttgattcctaatgcttgttagttggaagctgatggatcttgtaagaaattttatttattttattgtgtacttcagtact |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5246500 |
gggggagattctctcacaattttgattcctaatgcttgttagttggaagcagatggatcttgtaagaaattttatttattttattgtgtacttcagtact |
5246401 |
T |
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| Q |
317 |
tgttcgtagatgtgagagactgttttacgatcttcgaaattagaatgccaaaaa |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5246400 |
tgttcgtagatgtgagagactgttttacgatcttcgaaattagaatgccgaaaa |
5246347 |
T |
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