View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6399_high_15 (Length: 352)
Name: NF6399_high_15
Description: NF6399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6399_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 341
Target Start/End: Complemental strand, 40099179 - 40098855
Alignment:
| Q |
17 |
ctttttaggtaacgtacactttttaagcaatactcgatcggtgcatgcagtttaaagatgatttaacttttcctatttttatagaaaatgatgatttaac |
116 |
Q |
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| T |
40099179 |
ctttttaggtaacttacactttttaagcaatactcgatcggtgcatgtagtttaaagatgatttaacttttcctatttttatagaaaatgatgatttaac |
40099080 |
T |
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| Q |
117 |
ctttgaacttacttagatgattaaatttgatgcatgccacccacactatcgtcaaacattctaatcgaataacacggttgtaaggtctatgataaaacca |
216 |
Q |
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| T |
40099079 |
ctttgaacttacttagatgattaaatttgatgcatgccacccacactatcgtcaaacattctaatcgaataacacggttgtaaggtctatgataaaacta |
40098980 |
T |
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| Q |
217 |
aaaatatgctacaccttatttctaaaaacattaagttgacccttaattataattttcttttccttgttaaaccattagttttgccaagacggcaaggcca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40098979 |
aaaatatgctacaccttatttctaaaaacattaagttgacccttaattataattttcttttccttgttaaaccattagttttgccaagacggcaaggcca |
40098880 |
T |
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| Q |
317 |
gtaaacaaaataattaaataatatt |
341 |
Q |
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||||||||||||||||||||||||| |
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| T |
40098879 |
gtaaacaaaataattaaataatatt |
40098855 |
T |
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