View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6399_high_18 (Length: 253)
Name: NF6399_high_18
Description: NF6399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6399_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 118 - 237
Target Start/End: Original strand, 13646240 - 13646359
Alignment:
| Q |
118 |
ccccagcctgcaaattcaagccttacattttgtcatcttcttcgactaacattcaccttaaacctaatgtgtcactataaatattaataacaaaacatag |
217 |
Q |
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| T |
13646240 |
ccccagcctgcaaattcaagccttacattttgccatcttcttcaactaacattgaccttaaacctaatgcgtgactataaatattaataacaaaacatag |
13646339 |
T |
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| Q |
218 |
cctcttgttcctcttcaaac |
237 |
Q |
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| T |
13646340 |
cctcttattcctcttcaaac |
13646359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 76 - 170
Target Start/End: Original strand, 13643353 - 13643447
Alignment:
| Q |
76 |
gtggtccaaacattacacacaatgcagctagcacacctctgcccccagcctgcaaattcaagccttacattttgtcatcttcttcgactaacatt |
170 |
Q |
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| T |
13643353 |
gtggtccaaacattacacacagtgcagctagcactcctctgcccccagcctgcaaattcaagccttacattttgtcatcttcctcaactaacatt |
13643447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 76 - 201
Target Start/End: Original strand, 13638707 - 13638828
Alignment:
| Q |
76 |
gtggtccaaacattacacacaatgcagctagcacacctctgcccccagcctgcaaattcaagccttacattttgtcatcttcttcgactaacattcacct |
175 |
Q |
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| T |
13638707 |
gtggtctaaacattacacacagtgcagc----acgtctctgccctcagcctgcaaattcaagccttacattttgtcatcttcctcaactaacattcacct |
13638802 |
T |
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| Q |
176 |
taaacctaatgtgtcactataaatat |
201 |
Q |
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| T |
13638803 |
taaacctaatgcgtgactataaatat |
13638828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 237
Target Start/End: Original strand, 13643451 - 13643490
Alignment:
| Q |
198 |
atattaataacaaaacatagcctcttgttcctcttcaaac |
237 |
Q |
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| T |
13643451 |
atattaacaacaaaacatagcctcttgttcctcttcaaac |
13643490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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