View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6399_high_19 (Length: 252)
Name: NF6399_high_19
Description: NF6399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6399_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 50808460 - 50808239
Alignment:
| Q |
18 |
caaagcatatgaaaaaacaacgtgagtagttaactctttcttttgttggatagatatatgttaatttccaaggatctaaccctgaacttcatacttagaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
50808460 |
caaagcatatgaaaaaacaacgtgagtagttaactctttcttttgttggatagatatatgttagtttccaaggatctaaccctgaacttcatacttagaa |
50808361 |
T |
|
| Q |
118 |
ctccatcgatggatatcaaactttttgttcaattttgtagctttgttgccctgtttgaaattaaagtagaataatttgaaaaaaggtttgtgctttgtta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50808360 |
ctccatcgatggatatcaaactttttgttcaattttgtagctttgttgccctgtttgaaattaaagtagaataatttgaaaaaaggtttgtgctttgtta |
50808261 |
T |
|
| Q |
218 |
cattgtttgttagcctttgctt |
239 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
50808260 |
cattgtttgttagcctttgctt |
50808239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 50867403 - 50867624
Alignment:
| Q |
18 |
caaagcatatgaaaaaacaacgtgagtagttaactctttcttttgttggatagatatatgttaatttccaaggatctaaccctgaacttcatacttagaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
50867403 |
caaagcatatgaaaaaacaacgtgagtagttaactctttcttttgttggatagatatatgttagtttccaaggatctaaccctgaacttcatacttagaa |
50867502 |
T |
|
| Q |
118 |
ctccatcgatggatatcaaactttttgttcaattttgtagctttgttgccctgtttgaaattaaagtagaataatttgaaaaaaggtttgtgctttgtta |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50867503 |
ctccatcgatggatatcaaactttttgttcaattttgtagctttgttgccctgtttgaaattaaagtagaataatttgaaaaaaggtttgtgctttgtta |
50867602 |
T |
|
| Q |
218 |
cattgtttgttagcctttgctt |
239 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
50867603 |
cattgtttgttagcctttgctt |
50867624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 19054957 - 19055178
Alignment:
| Q |
18 |
caaagcatatgaaaaaacaacgtgagtagttaactctttcttttgttggatagatatatgttaatttccaaggatctaaccctgaacttcatacttagaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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|
| T |
19054957 |
caaagcatatgaaaaaacaacgtgagtagttaagtctttctttttttggatagatatatgttagtttccaaggatcaaaccctgaacttcatacttagaa |
19055056 |
T |
|
| Q |
118 |
ctccatcgatggatatcaaactttttgttcaattttgtagctttgttgccctgtttgaaattaaagtagaataatttgaaaaaaggtttgtgctttgtta |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19055057 |
ctccatcgatggatatcaaactttttgttcaattttgtagctttgttgccctgtttgaaattaaagtagaataatttgaaaaaaggtttgtgctttgtta |
19055156 |
T |
|
| Q |
218 |
cattgtttgttagcctttgctt |
239 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
19055157 |
cattgtttgttagcctttgctt |
19055178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 31109800 - 31109735
Alignment:
| Q |
63 |
ttggatagatatatgttaatttccaaggatctaaccctgaacttcatacttagaactccatcgatg |
128 |
Q |
| |
|
|||||||||||||||| | |||||||||||| ||||||||| ||| ||||||||||||| |||||| |
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| T |
31109800 |
ttggatagatatatgtcagtttccaaggatcaaaccctgaagttcctacttagaactccttcgatg |
31109735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 31109878 - 31109838
Alignment:
| Q |
18 |
caaagcatatgaaaaaacaacgtgagtagttaactctttct |
58 |
Q |
| |
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||||||||||| |||||||||||||||||||||| |||||| |
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| T |
31109878 |
caaagcatatggaaaaacaacgtgagtagttaaccctttct |
31109838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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