View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6399_high_2 (Length: 623)
Name: NF6399_high_2
Description: NF6399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6399_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 27 - 610
Target Start/End: Complemental strand, 52578725 - 52578140
Alignment:
| Q |
27 |
ctcaatatggtattctatattgctctttcagagaacgtttgttggggttgannnnnnnagtgtatttcaagaggtttatcttcaaacaaatgatccacgc |
126 |
Q |
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| T |
52578725 |
ctcaatatggtattctatattgctctttcagagaacgtttgttggggttgatttttttagtgtatttcaagaggtttatcttcaaacaaatgatccacgc |
52578626 |
T |
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| Q |
127 |
gtaaccaatattgtgtcattttctgatgccatcggtgagctcaaggttgaggtaatactaagtaacttcaattggagctatcataaatttaatacacact |
226 |
Q |
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| T |
52578625 |
gtaaccaatattgtgtcattttctgatgccatcggtgagctcaaggttgaggtaatactaagtaacttcaattggagctatcataaatttaatacacact |
52578526 |
T |
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| Q |
227 |
tctgtgttaaattccacttcannnnnnnnnnn---aatactacgcgagacagactgaaactagtaaactttttagtttaagaggcttagtcaatatttgt |
323 |
Q |
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| T |
52578525 |
tctgtgttaaattctacttcattttttttttttttaatactgcgcgagacagactgaaactagtaaactttttagtttaagaggcttagtcaatatt-gt |
52578427 |
T |
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| Q |
324 |
gaaataaatcatgccacataaattcaaaggttggctatctcttcaaaaatttgttaaaagtattgttaaaaattacagctcatttaattgctatgtgctt |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52578426 |
gaaataaatcatgccacataaattcaaaggttggctatctcttcaaaaatttgttaaaagtattgttaaaaattacagctcatttaattgctatgtgctt |
52578327 |
T |
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| Q |
424 |
ctaaagaatcaagagttaatataatatggatagcattctggctttcttcgtgtatttcaggatagttgaattcccgtttgtgtttgtgcttgtcattcaa |
523 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52578326 |
ctaaagaatcaagagttaatataatatggatagcattctggctttcttcgtgtatatcaggatagttgaattcccgtttgtgtttgtgcttgtcattcaa |
52578227 |
T |
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| Q |
524 |
aaaacccttatatcatatagctgttcatatattttactattttattctctgatctattgattggtttttcggtagagtcaattgatg |
610 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52578226 |
aaaacccttatatcatatagctgttcatatattttactattttattctctgatctattgattggtttttcggtagagtcaattgatg |
52578140 |
T |
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