View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6399_high_20 (Length: 251)
Name: NF6399_high_20
Description: NF6399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6399_high_20 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 53040726 - 53040962
Alignment:
| Q |
16 |
atgaacttgaaaggccctttgccttgaagaagcttactctagataacaaaacctgcattaag---aaggattattaaaagctttgtaataaagtaagtag |
112 |
Q |
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| T |
53040726 |
atgaactggaaaggccctttgccttgaagaagcttactctagatagcaaaacctgcattaagaaaaaggatga-tgaaagctttgtaataaagtaagtag |
53040824 |
T |
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| Q |
113 |
atgtaacatctaggataagtagaagtatcccctagtatatacatgaaagcattgcaaagtttgtaaataaaataagtagaagtatcatttaggataagat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
53040825 |
atgtaacatctaggataagtagaagtatcccctagtatatacatgaaagcattgcaaagtttgt-aacaaaataagtagaagtatcatttaggataagat |
53040923 |
T |
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| Q |
213 |
aatgccataaggcttgattgagtctattctatgtaatgt |
251 |
Q |
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|||||||||| ||||||||||||||||||| |||||||| |
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| T |
53040924 |
aatgccataaagcttgattgagtctattctgtgtaatgt |
53040962 |
T |
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