View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6399_high_24 (Length: 241)
Name: NF6399_high_24
Description: NF6399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6399_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 30594976 - 30594750
Alignment:
| Q |
1 |
ttaaccaatcgtttaggcatcaaagcttttcattattgcattattagttcaatcatggttggttatagtctaacaccagctagatattcacagggaaaca |
100 |
Q |
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| T |
30594976 |
ttaaccaagcgtttaggcatcaaagcttttcattattgcattattagttcaatcatggttggttatagtctaacaccagctagatattcacagggaaaca |
30594877 |
T |
|
| Q |
101 |
atttaactgaatttgatctaatgcaaccaccttatggttacccagattcttctatcaggcttcatagtcatgaagcaaaagctttggctgctatgaggaa |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30594876 |
atttaactgaatttgatctcatgcaaccaccttatggttacccagattcttctatcaggcttcatagtcatgaagcaaaagctttggctgctatgaggaa |
30594777 |
T |
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| Q |
201 |
aaacacttttggtagcaatgttctttt |
227 |
Q |
| |
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||||||||||||||||||||| ||||| |
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| T |
30594776 |
aaacacttttggtagcaatgtactttt |
30594750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 30612324 - 30612098
Alignment:
| Q |
1 |
ttaaccaatcgtttaggcatcaaagcttttcattattgcattattagttcaatcatggttggttatagtctaacaccagctagatattcacagggaaaca |
100 |
Q |
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|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| | |||| ||||| ||||||||||| ||||||| |
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| T |
30612324 |
ttaaccaaacgtttagacatcaaagcttttcattattgcattattagttcaatcatgattggttacactctagcaccatctagatattcaaagggaaaag |
30612225 |
T |
|
| Q |
101 |
atttaactgaatttgatctaatgcaaccaccttatggttacccagattcttctatcaggcttcatagtcatgaagcaaaagctttggctgctatgaggaa |
200 |
Q |
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||||||| |||||||||||||||||||| |||| ||||||||| | ||| ||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30612224 |
atttaaccgaatttgatctaatgcaacctccttctggttaccctggttcatctatcaagcttcatagtcatgaagcaaaagctttcgctgctatgaggaa |
30612125 |
T |
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| Q |
201 |
aaacacttttggtagcaatgttctttt |
227 |
Q |
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|||||||| |||||||||||| ||||| |
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| T |
30612124 |
aaacacttatggtagcaatgtactttt |
30612098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 30614335 - 30614114
Alignment:
| Q |
10 |
cgtttaggcatcaaagcttttcattattgcattattagttcaatcatg----gttggttatagtctaacaccagctagatattcacagggaaacaattta |
105 |
Q |
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|||||||| ||||||||| |||||||||||| | |||||| | ||| |||||||| | |||||||||||||||||||||| |||||| ||||| |
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| T |
30614335 |
cgtttaggtatcaaagctcttcattattgcactgctagttcggttatgattggttggttacactctaacaccagctagatattcaatgggaaaagattta |
30614236 |
T |
|
| Q |
106 |
actgaatttgatctaatgcaaccaccttatggttacccagattcttctatcaggcttcatagtcatgaagcaaaagctttggctgctatgaggaaaaaca |
205 |
Q |
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|| ||||||||||| ||| |||| |||| ||||||||| ||||| ||||||| |||| ||| ||||||||| ||||| || | |||| |||||| | |
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| T |
30614235 |
accgaatttgatctcatggaacctccttctggttaccctgattcatctatcaagctttataatcatgaagctaaagcctttgtagctaaaaggaaagaat |
30614136 |
T |
|
| Q |
206 |
cttttggtagcaatgttctttt |
227 |
Q |
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||||||||||||||||||||| |
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| T |
30614135 |
tttttggtagcaatgttctttt |
30614114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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