View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6399_high_25 (Length: 239)
Name: NF6399_high_25
Description: NF6399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6399_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 26605614 - 26605817
Alignment:
| Q |
18 |
gatgtaattaagagacgtataataataattcagatttttgaaagggtttcttacaactttataagcgctaaaaaatatttaattaacgtaaacatattca |
117 |
Q |
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| T |
26605614 |
gatgtaattaagagacgtataataataattcagatttttgaaagggtttcttacaactttataagcgttaaaaaatatttaattaacgtaaacatatcca |
26605713 |
T |
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| Q |
118 |
tgatattttcacaatataaagtgatcaaataattttctatttgcaaagnnnnnnnntgattgaaattattaagtttgtttatgttatgatcttctttatt |
217 |
Q |
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| T |
26605714 |
tgatattttcacaatataaagtgatcaaataattttctatttgcaaagaaaaaaaatgattgaaattattaagtttgtttatattatgatcttctttatt |
26605813 |
T |
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| Q |
218 |
tcca |
221 |
Q |
| |
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|||| |
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| T |
26605814 |
tcca |
26605817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 19199173 - 19199215
Alignment:
| Q |
177 |
ttgaaattattaagtttgtttatgttatgatcttctttatttc |
219 |
Q |
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|||||||| |||||||||||||||||||||| |||||||||| |
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| T |
19199173 |
ttgaaattgttaagtttgtttatgttatgattatctttatttc |
19199215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 29451353 - 29451395
Alignment:
| Q |
177 |
ttgaaattattaagtttgtttatgttatgatcttctttatttc |
219 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29451353 |
ttgaaattcttaagtttgtttatgttatgatcttctttatttc |
29451395 |
T |
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