View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6399_high_28 (Length: 227)
Name: NF6399_high_28
Description: NF6399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6399_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 15375596 - 15375376
Alignment:
| Q |
1 |
cagaaagatttttattagcgtggaacaattaaaaaatgtagcatacatttagttttctcatgttctccaatgaacaaatttctccactgcggatatagtt |
100 |
Q |
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| T |
15375596 |
cagaaagatttttattagcgtggaacaattaaaaaatgtagcatacatttagttttctcatgttctccaatgaacaaatttttccactgcggatatagtt |
15375497 |
T |
|
| Q |
101 |
actttcacataaagcttttttatcccgtatatttacaatcattgaatattttcttgtgcttctttagaaattgagatgcatcaatattcctcattgttgg |
200 |
Q |
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| T |
15375496 |
actttcacataaagcttttttatcccgtatatttacaatcattgaatattttcttgtgcttctttagaaattgaaatgcatcaatattcctcattgttgg |
15375397 |
T |
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| Q |
201 |
tgaacgaatcaaagcctgaac |
221 |
Q |
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|| |||||||||||||||||| |
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| T |
15375396 |
tgtacgaatcaaagcctgaac |
15375376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 215
Target Start/End: Complemental strand, 26705024 - 26704916
Alignment:
| Q |
107 |
acataaagcttttttatcccgtatatttacaatcattgaatattttcttgtgcttctttagaaattgagatgcatcaatattcctcattgttggtgaacg |
206 |
Q |
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|||||||| |||||||| || ||| ||| ||||||| |||| |||||||| |||| |||||| | || |||||||||| ||||||||| |||| ||| |
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| T |
26705024 |
acataaagattttttattccatatctttgcaatcatcaaataatttcttgttcttccgtagaaaatcaggtgcatcaatactcctcattgccggtgtacg |
26704925 |
T |
|
| Q |
207 |
aatcaaagc |
215 |
Q |
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| T |
26704924 |
aatcaaagc |
26704916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 217
Target Start/End: Complemental strand, 26713823 - 26713631
Alignment:
| Q |
26 |
caattaaaaaatgtagcatacatttagttttctcatgttctccaatgaacaaat-ttctccactgcggatatagttactttcacataaagcttttttatc |
124 |
Q |
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|||||| |||| |||| || |||||||||| ||||||||||| ||||||||| || || ||| ||||||||||| ||| | ||||| ||||||| |
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| T |
26713823 |
caattataaaacgtagtatgcatttagtttcctcatgttctcttatgaacaaaaattttcaactatggatatagttaattttatataaataatttttatt |
26713724 |
T |
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| Q |
125 |
ccgtatatttacaatcattgaatattttcttgtgcttctttagaaattgagatgcatcaatattcctcattgttggtgaacgaatcaaagcct |
217 |
Q |
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||||| || |||||||| |||||||||| || |||| || ||||| | || |||||||||| ||||| ||||| |||||||||||||| |
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| T |
26713723 |
ccgtacgttcacaatcatcaaatattttctggtttttctctaaaaattcatctggatcaatattcgccattgctggtgtacgaatcaaagcct |
26713631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 26705068 - 26705028
Alignment:
| Q |
46 |
catttagttttctcatgttctccaatgaacaaatttctcca |
86 |
Q |
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||||||||||||||||||||| |||||||||||||||||| |
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| T |
26705068 |
catttagttttctcatgttctataatgaacaaatttctcca |
26705028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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