View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6399_high_3 (Length: 566)
Name: NF6399_high_3
Description: NF6399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6399_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 151 - 548
Target Start/End: Complemental strand, 44250094 - 44249698
Alignment:
| Q |
151 |
gttaattcctcgtgctagtcaattgctatctttttgtcattcctatgtttgaaaaagaatggtaatagaatcagtaatgatatttttcttttcctaaaaa |
250 |
Q |
| |
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||||||||||| ||| || ||||||||||||||||||||||| |||||||||||||||| |||||| ||||| |||||| ||||||||||||||||||| |
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| T |
44250094 |
gttaattcctcatgccagccaattgctatctttttgtcattcatatgtttgaaaaagaacagtaatataatca-taatgaaatttttcttttcctaaaaa |
44249996 |
T |
|
| Q |
251 |
agaagcttttcaattaagacgttttgtctaaaaaatacttagtagataattaatgtcaacacttgctgttaaaccaagggagaaaccaatattagaatga |
350 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||||||| ||||||||| |
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| T |
44249995 |
agaagcttttcaattaagacgttttgcctaaaaaatacttattagataattaatgtcaacatttgctattaaaacaagggagaaaccaatcttagaatga |
44249896 |
T |
|
| Q |
351 |
tcaccatttaaactagtgaggaacaaagccaaaaacgagaataagaaaacgctttgaataaagatgaccacaactacaaaaccattcaaagaaaaattca |
450 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44249895 |
tcaccatttaaactagtgaggaacaaagccaaaaacgagaataagaaaacgctttgaaaaaagatgaccacaactacaaaaccattcaaagaaaaattca |
44249796 |
T |
|
| Q |
451 |
ccaaaacatttgtgccctcaattttctattcactactacctttagctctaatttgtctatacttttacttccacttatttgctccaattttcacttcc |
548 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44249795 |
ccaaaacatttgtgccctcaattttctattcactactacctttcgctctaatttgtctatacttttacttccactcatttgctccaattttcacttcc |
44249698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 35 - 282
Target Start/End: Complemental strand, 44250380 - 44250133
Alignment:
| Q |
35 |
cttataatttaagactattttttcttcaaaccgacttataatatgcaatggaggaaatgaatgaaaccaaattccaagatacatgaagggccaaataatg |
134 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44250380 |
cttataatttaagactattttttcttcaaaccgacttataatctgcaatggaggaaatgaatgaaaccaaattccaaaatacatgaagggccaaataatg |
44250281 |
T |
|
| Q |
135 |
tggtaaatgagagtatgttaattcctcgtgctagtcaattgctatctttttgtcattcctatgtttgaaaaagaatggtaatagaatcagtaatgatatt |
234 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44250280 |
tagtaaatgagagtatgttaattcctcgtgctagtcaattgctatctttttgtcattcctatgtttgaaaaagaatggtaatagaatcagtaatgatatt |
44250181 |
T |
|
| Q |
235 |
tttcttttcctaaaaaagaagcttttcaattaagacgttttgtctaaa |
282 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
44250180 |
tttcttttcctaaaaaagaagcttttcaattaagacgttttgcctaaa |
44250133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 139 - 545
Target Start/End: Complemental strand, 44253692 - 44253311
Alignment:
| Q |
139 |
aaatgagagtatg-ttaattcctcgtgctagtcaattgctatctttttgtcattcctatgtttgaaaaagaatggtaatagaatcagtaatgatattttt |
237 |
Q |
| |
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||||| ||||||| |||||||||||| | || ||||||||||| | ||||| ||||||||||||||||||||| ||||| ||||||| ||||||| |
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| T |
44253692 |
aaatgggagtatggttaattcctcgttccagccaattgctatcctcttgtctttcctatgtttgaaaaagaat------agaataagtaatg-tattttt |
44253600 |
T |
|
| Q |
238 |
cttttcctaaaaaagaagcttttcaattaagacgttttgtctaaaaaatacttagtagataattaatgtcaacacttgctgttaaaccaagggag-aaac |
336 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||| ||| || ||||||||||| |||| |
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| T |
44253599 |
ttcttcctaaaaaagaagcttttcaattaagacgttttgcctaaaaaata----gtaaataattaatgtcagcacg----gtaaaaccaagggaataaac |
44253508 |
T |
|
| Q |
337 |
caatattagaatgatcaccatttaaactagtgaggaacaaagccaaaaacgagaataagaaaacgctttgaataaagatgaccacaactacaaaaccatt |
436 |
Q |
| |
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|||| |||||||||||||| || | | ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||| || |
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| T |
44253507 |
caatcttagaatgatcaccccttgaccaagtgaagaacaaagccaaaaacgagaataagaaaacgctttgaaaaaagatgatcaca------------tt |
44253420 |
T |
|
| Q |
437 |
caaagaaaaattcaccaaaacatttgtgccctcaattttctattcactactacctttagctctaatttgtctatacttttacttccacttatttgctcca |
536 |
Q |
| |
|
|||||||||| |||||||||||||| ||| |||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
44253419 |
caaagaaaaactcaccaaaacatttttgcactcaatcttctattcactgctacctatagctctaatttgtctatacttttacttccactcatttgctcca |
44253320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 35 - 282
Target Start/End: Complemental strand, 50112544 - 50112307
Alignment:
| Q |
35 |
cttataatttaagactattttttcttcaaaccgacttataatatgcaatggaggaaatgaatgaaaccaaattccaagatacatgaagggccaaataatg |
134 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50112544 |
cttataatttaagacaagtttttcttcaaaccgacttataatctacaatggaggaaatgaatgaaaccaaattccaagatacatgaagggccaaataata |
50112445 |
T |
|
| Q |
135 |
tggtaaatgagagtatgttaattcctcgtgctagtcaattgctatctttttgtcattcctatgtttgaaaaagaatggtaatagaatcagtaatgatatt |
234 |
Q |
| |
|
| ||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||| | | |||||||||| |
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| T |
50112444 |
tagtaaatgagagtatgttaattcctcgtgccagccaattgctatccttttgtcattcctatgtttgaagaagaat----------ttattaatgatatt |
50112355 |
T |
|
| Q |
235 |
tttcttttcctaaaaaagaagcttttcaattaagacgttttgtctaaa |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
50112354 |
tttcttttcctaaaaaagaagcttttcaattaagacgttttgcctaaa |
50112307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 372 - 545
Target Start/End: Complemental strand, 11821611 - 11821439
Alignment:
| Q |
372 |
aacaaagccaaaaacgagaataagaaaacgctttgaataaagatgaccacaactacaaaaccattcaaagaaaaattcaccaaaacatttgtgccctcaa |
471 |
Q |
| |
|
||||||||||||| | |||||||||||| |||||||| ||||||| |||| || ||| |||||||||||||| |||||||||||||||||||||| | |
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| T |
11821611 |
aacaaagccaaaacctagaataagaaaa-gctttgaaagaagatgataacaattataaacacattcaaagaaaaactcaccaaaacatttgtgccctcca |
11821513 |
T |
|
| Q |
472 |
ttttctattcactactacctttagctctaatttgtctatacttttacttccacttatttgctccaattttcact |
545 |
Q |
| |
|
|||||||||| | ||||||||||||||| |||| ||||||||||||||| || |||||||||| ||| |||| |
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|
| T |
11821512 |
ttttctattctttgctacctttagctctagtttgcctatacttttacttctcctcatttgctccattttacact |
11821439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 371 - 545
Target Start/End: Original strand, 15273545 - 15273719
Alignment:
| Q |
371 |
gaacaaagccaaaaacgagaataagaaaacgctttgaataaagatgaccacaactacaaaaccattcaaagaaaaattcaccaaaacatttgtgccctca |
470 |
Q |
| |
|
|||||||||||||| || |||| |||||| ||||||| |||||| |||| |||||| |||||||||||||| ||||||||| |||||| |||||| |
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|
| T |
15273545 |
gaacaaagccaaaagggacaataggaaaacactttgaaagaagatggtaacaattacaaacacattcaaagaaaaactcaccaaaatatttgttccctca |
15273644 |
T |
|
| Q |
471 |
attttctattcactactacctttagctctaatttgtctatacttttacttccacttatttgctccaattttcact |
545 |
Q |
| |
|
||||||||||| || ||| | |||||||| |||| ||||||||||||||||||| |||||||||| |||||||| |
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|
| T |
15273645 |
attttctattcgctgttacttgtagctctattttgcctatacttttacttccactcatttgctccatttttcact |
15273719 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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