View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6399_high_30 (Length: 224)
Name: NF6399_high_30
Description: NF6399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6399_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 14 - 206
Target Start/End: Original strand, 40515941 - 40516130
Alignment:
| Q |
14 |
cacagatagccgaagttcaaccttggcaaattttttgcactttgaaaatggtctaaaagccccattcggattttcgaatttaaaaattggaggcattttc |
113 |
Q |
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| T |
40515941 |
cacagatagccgaagttcaaccttggcaaattttttgcactttgaaaatggtctaaaagccccattcggattttcgaatttaaaaattggaggcattttc |
40516040 |
T |
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| Q |
114 |
gaaatttgagatagtgtgcg-gaagcatggtgggtgaaaaaagaaattttctaaaaatattggcaaacaactattttggtttatgagtgtgcaa |
206 |
Q |
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| T |
40516041 |
gaaatttgagatagtgtgcgagaagcatggtgggtgaaaaaagaaattctctaaaaatattgg----caactattttggtttatgagtgtgcaa |
40516130 |
T |
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