View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6399_high_8 (Length: 451)
Name: NF6399_high_8
Description: NF6399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6399_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 89 - 434
Target Start/End: Complemental strand, 985688 - 985343
Alignment:
| Q |
89 |
taatttagttgtacaaatgtagttggttggttagcaaatttctagtgttataaaagcatagtttagcataaaactttggtgatttttactttcatttatc |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
985688 |
taatttagttgtacaaatgtagttggttggttagcaaatttctagtgttataaaagcatagtttagcataaaactttggtgatttttactttcatttatc |
985589 |
T |
|
| Q |
189 |
gnnnnnnnagttacttttggcgattagtgtaacatttttccatggtcaatgtatctaccaagttcactccttcatcttcccctcttatcacctcccattt |
288 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
985588 |
gttttgttagttacttttggcgattagtgtaacatttttccatggtcaatgtatctaccaagttcactccttcatcttaccctcttatcacctcccattt |
985489 |
T |
|
| Q |
289 |
cctcaaaacttgtttgctttagtgctcacaacaatgattcccaatctcctttgccaaggtatgtcttagaatttctctattgtctcacatcatcaccctt |
388 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
985488 |
cctcaaaacttgtatgctttagtgctcacaaccatgattcccaatctcctttgccaaggtatgtcttagaatttctctattgtctcacatcatcaccctt |
985389 |
T |
|
| Q |
389 |
tcattttatattatacactagattttgaaattatggttgcactcac |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
985388 |
tcattttatattatacactagattttgaaattatggttgcactcac |
985343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 985785 - 985692
Alignment:
| Q |
20 |
accgtctgttctatgacataatggttgcaggttgcttgcatatgtacctgcattacatatcaggcaacttaatttagttgtacaaatgtagttg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
985785 |
accgtctgttctatgacataatggttgcaggttgcttgcatatgtacctgcattacatatcaggcaacttaatttagttgtacaaatgtagttg |
985692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University