View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6399_low_1 (Length: 628)
Name: NF6399_low_1
Description: NF6399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6399_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 11 - 613
Target Start/End: Complemental strand, 28491888 - 28491284
Alignment:
| Q |
11 |
cataggcaaaggactctcatactatattgggatggatgtagtatcaattggaggggacacgtacatattcatttaacttgactcgtgatagtctctaatg |
110 |
Q |
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| T |
28491888 |
cataggcaaaggactctcatactatattgggatggatgtagtatcaattggaggggacacgtacatatttatttaacttgactcgtgatagtctctaatg |
28491789 |
T |
|
| Q |
111 |
gtaaaa-tataccattttgcacggtaaacaagtaacatttgatttctaaaaagttgaaaatacaatttttcaacataaaatttctacttgtatccttaaa |
209 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28491788 |
gtaaaaatataccattttgcatggtaaacaagtaacatttgatttctaaaaagttgaaaatacaatttttcaacataaaatttctacttgtatccttaaa |
28491689 |
T |
|
| Q |
210 |
caatgcatacactctttagcattttctttttacaaattcctaaaaatcaagcattaatttgattctagttacaatttggatgactaatttgcatattcac |
309 |
Q |
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| T |
28491688 |
caatgcatacactctttagcattttctttttacaaattcctaaaaatcaagcattaatttgattctagttacaatttggatgactaatttgcacattcac |
28491589 |
T |
|
| Q |
310 |
tcctaaattattattagcta-nnnnnnngggaaggttaatccaatttgattcctttggataagcttttatacttatggttgtttgtgaccagttatataa |
408 |
Q |
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| T |
28491588 |
tactaaattattattagctattttttttggaaaggttaatccaatttgattcctttggataagcttttatacttatggttgtttgtgaccagttatataa |
28491489 |
T |
|
| Q |
409 |
gaagagaagcacagtagttgtaatgtagcaagaatctaggtgacagagtaggttttgtggtacaccctgattccctagtagtagtaactataacaaagtg |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28491488 |
gaagagaagcacagtagttgtaatgtagcaagaatctaggtgacagagtaggttttgtggtacaccctgattccctagtaatagtaactataacaaagtg |
28491389 |
T |
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| Q |
509 |
aaaaactccagctaccaagaggttaaacagtgaaaatagttttcatccagccgttagatttgtcaagtggtaactatatatactggtggtcaaagttgtt |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28491388 |
aaaaactccagctaccaagaggttaaacagtgaaaatagttttcatccggccgttagatttgtcaagtggtaactatatatactggtggtcaaagttgtt |
28491289 |
T |
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| Q |
609 |
aattt |
613 |
Q |
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| T |
28491288 |
aattt |
28491284 |
T |
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