View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6399_low_10 (Length: 443)
Name: NF6399_low_10
Description: NF6399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6399_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 10381207 - 10381625
Alignment:
| Q |
18 |
aaaaaggacgtatataaaatgttattatgaacttctaagaactaaacaatgacaaaattctaaagactagnnnnnnnnnnnnnnnnnnnctatgtttatc |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10381207 |
aaaaaggaagtatataaaatgttattatgaacttctaagaactaaacaatgacaaaattctaaagactaggaaaaaaaaaaaaaaggaactatgtttatc |
10381306 |
T |
|
| Q |
118 |
aattcaattatgctttcctgtaaaa-aataaaattctgatttgaaaatatgatcattgaatttcggaacgacacaatgggcaggaatataatcgattgct |
216 |
Q |
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| T |
10381307 |
aattcaattatgctttcctgtaaaaaaataaaattctgatttgaaaatatgatcattgaatttcggaacgacacaatgggcaggaatataatcgattgct |
10381406 |
T |
|
| Q |
217 |
aatgcaacactgcataagccaccgagcaacacattgttgatggaaaacatgcttgcacttggtacgaacaatgtctggtacttctgtttcattgtaaaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10381407 |
aatgcaacactgcataagccaccgagcaacacattgttgatggaaaacatgcatgcacttggtacgaacaatggctggtacttctgtttcattgtaaaac |
10381506 |
T |
|
| Q |
317 |
tccttcaaacaaattgagcattgttccattgaacaagcggtatctgcattgtcctccactttgatcttctccaacgaattcataacattcgttacatcat |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10381507 |
tccttcaaacaaattgagcattgttccattgaacaagcggtatctgcattgtcgtccactttgatcttctccaacgaattcataacattcgttacatcat |
10381606 |
T |
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| Q |
417 |
gaaccgtaacattcatctc |
435 |
Q |
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| T |
10381607 |
gaaccgtaacactcatctc |
10381625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 166 - 352
Target Start/End: Original strand, 10429054 - 10429240
Alignment:
| Q |
166 |
tgatcattgaatttcggaacgacacaatgggcaggaatataatcgattgctaatgcaacactgcataagccaccgagcaacacattgttgatggaaaaca |
265 |
Q |
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|||||||||||||| |||||||||| ||| || |||||||| |||||| || || ||| || ||||||||||||||||||| |||| ||| |||| | |
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| T |
10429054 |
tgatcattgaatttgagaacgacacactggacaagaatataaacgattgtgaaagctacattgtttaagccaccgagcaacacaatgttcatgaaaaaaa |
10429153 |
T |
|
| Q |
266 |
tgcttgcacttggtacgaacaatgtctggtacttctgtttcattgtaaaactccttcaaacaaattgagcattgttccattgaacaa |
352 |
Q |
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||| | ||||||||||||| ||||| ||||||||||| | ||| |||| |||| |||||||||||| |||||||| |||||||| |
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| T |
10429154 |
tgcatacacttggtacgaataatgtgtggtacttctgatccatcacaaaattcctccaaacaaattgaacattgttctcttgaacaa |
10429240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 166 - 290
Target Start/End: Original strand, 10396771 - 10396895
Alignment:
| Q |
166 |
tgatcattgaatttcggaacgacacaatgggcaggaatataatcgattgctaatgcaacactgcataagccaccgagcaacacattgttgatggaaaaca |
265 |
Q |
| |
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|||||||||||||| ||||||||||| |||||||| |||| | ||||| ||||| ||| ||||||| ||| || |||||| || | |||||||||| |
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| T |
10396771 |
tgatcattgaatttgggaacgacacattgggcagggatattgtggattggtaatgtcacaatgcataatccaattagtaacacaatgctcatggaaaaca |
10396870 |
T |
|
| Q |
266 |
tgcttgcacttggtacgaacaatgt |
290 |
Q |
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||| ||||||||||||||||||||| |
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| T |
10396871 |
tgcatgcacttggtacgaacaatgt |
10396895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 166 - 290
Target Start/End: Original strand, 10406991 - 10407115
Alignment:
| Q |
166 |
tgatcattgaatttcggaacgacacaatgggcaggaatataatcgattgctaatgcaacactgcataagccaccgagcaacacattgttgatggaaaaca |
265 |
Q |
| |
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|||||||||||||| ||||||||||| |||||||| |||| | ||||| ||||| ||| | ||||| ||| || |||||| || | |||||||||| |
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| T |
10406991 |
tgatcattgaatttgggaacgacacattgggcagggatattgtggattggtaatgtcacaattcataatccaattagtaacacaatgctcatggaaaaca |
10407090 |
T |
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| Q |
266 |
tgcttgcacttggtacgaacaatgt |
290 |
Q |
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||| ||||||||||||||||||||| |
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| T |
10407091 |
tgcatgcacttggtacgaacaatgt |
10407115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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