View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6399_low_20 (Length: 324)
Name: NF6399_low_20
Description: NF6399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6399_low_20 |
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| [»] chr3 (3 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 13 - 324
Target Start/End: Original strand, 50807950 - 50808261
Alignment:
| Q |
13 |
aaaatatgattgtgagtggtttcaaaaattccaaatcatggtttcaaaaattccaaatcacgtaacatgccattgcacatgtttatcaaaggtctagaaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50807950 |
aaaatatgattgtgagtggtttcaaaaattccaaatcatggtttcaaaaattccaaatcacgtaacatgccattgcacatgtttatcaaaggtctagaaa |
50808049 |
T |
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| Q |
113 |
agttacaaaccaattgtttagcatactttaatttcaggaatcaaacttgaagtctgaaagtaaagcaatgcaaagcctaaaattcaaaacttaatgttgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50808050 |
agttacaaaccaattgtttagcatactttaatttcaggaatcaaacttgaagtctgaaagtaaagcaatgcaaagcctaaaattcaaaacttaatgttgt |
50808149 |
T |
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| Q |
213 |
tgcacatgggaatcccaatttggaatcacaaccaaatgaatgtcaacccaatttttaacacaatgaaacaatcatcaatggaggtaaccaagcaaaggct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50808150 |
tgcacatgggaatcccaatttggaatcacaaccaaatgaatgtcaacccaatttttaacacaatgaaacaatcatcaatggaggtaaccaagcaaaggct |
50808249 |
T |
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| Q |
313 |
aacaaacaatgt |
324 |
Q |
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|||||||||||| |
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| T |
50808250 |
aacaaacaatgt |
50808261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 68 - 324
Target Start/End: Complemental strand, 50867858 - 50867602
Alignment:
| Q |
68 |
aatcacgtaacatgccattgcacatgtttatcaaaggtctagaaaagttacaaaccaattgtttagcatactttaatttcaggaatcaaacttgaagtct |
167 |
Q |
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| T |
50867858 |
aatcatgtaacatgccattgaacatgtttatcaaaggtctagaaaagttacaaaccaattgtttagcatactttaatttcaggaatcaaacttgaagtct |
50867759 |
T |
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| Q |
168 |
gaaagtaaagcaatgcaaagcctaaaattcaaaacttaatgttgttgcacatgggaatcccaatttggaatcacaaccaaatgaatgtcaacccaatttt |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50867758 |
gaaagtaaagcaatgcaaagcctaaaattcaaaacttaatgttgttgcacatgggaatcccaatttggaatcacaaccaaatgaatgtcaacccaatttt |
50867659 |
T |
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| Q |
268 |
taacacaatgaaacaatcatcaatggaggtaaccaagcaaaggctaacaaacaatgt |
324 |
Q |
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| T |
50867658 |
taacacaatgaaacaatcatcaatggaagtaaccaagcaaaggctaacaaacaatgt |
50867602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 50867928 - 50867886
Alignment:
| Q |
13 |
aaaatatgattgtgagtggtttcaaaaattccaaatcatggtt |
55 |
Q |
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| T |
50867928 |
aaaatatgattgtgagtggtttcaaaaattccaaatcatggtt |
50867886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 68 - 324
Target Start/End: Complemental strand, 19055412 - 19055156
Alignment:
| Q |
68 |
aatcacgtaacatgccattgcacatgtttatcaaaggtctagaaaagttacaaaccaattgtttagcatactttaatttcaggaatcaaacttgaagtct |
167 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19055412 |
aatcatgtaacatgccattgaacatgtttatcaaaggtctagaaaagttacaaaccaattgtttagcatactttaatttcaggaatcaaacttgaagtct |
19055313 |
T |
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| Q |
168 |
gaaagtaaagcaatgcaaagcctaaaattcaaaacttaatgttgttgcacatgggaatcccaatttggaatcacaaccaaatgaatgtcaacccaatttt |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19055312 |
gaaagtaaagcaatgcaaagcctaaaattcaaaacttaatgttgttgcacatgggaatcccaatttggaatcacaaccaaatgaatgtcaacccaatttt |
19055213 |
T |
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| Q |
268 |
taacacaatgaaacaatcatcaatggaggtaaccaagcaaaggctaacaaacaatgt |
324 |
Q |
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| T |
19055212 |
taacacaatgaaacaatcatcaatggaagtaaccaagcaaaggctaacaaacaatgt |
19055156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 19055482 - 19055440
Alignment:
| Q |
13 |
aaaatatgattgtgagtggtttcaaaaattccaaatcatggtt |
55 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19055482 |
aaaatatgattgtgagtggtttcaaaaattccaaatcatggtt |
19055440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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