View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6399_low_25 (Length: 247)
Name: NF6399_low_25
Description: NF6399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6399_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 243
Target Start/End: Complemental strand, 30612687 - 30612456
Alignment:
| Q |
12 |
tcatcatctccattacacatagcaatgtatccatggtttgcaatgggccaccaaactccattccttcacctagcaaacaaactagcnnnnnnnggtcaca |
111 |
Q |
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| T |
30612687 |
tcatcatctcctttacacatagcaatgtatccatggtttgcaatgggccaccaaactccattccttcatctagcaaacaaactagcaaaaaaaggtcaca |
30612588 |
T |
|
| Q |
112 |
aaatcacttttttcacacctaaatcagcacaatccaaattagaaccattcaatctctacccacaattaatcacttttatcaccatcaaagttcctcatgt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30612587 |
aaatcacttttttcacacctaaatcagcacaatccaaattagaaccattcaatctctacccacaattaatcacttttatcaccatcaaagttcctcatgt |
30612488 |
T |
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| Q |
212 |
tgaaggtctccctctcaatgcagaaacaacag |
243 |
Q |
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| T |
30612487 |
tgaaggtctccctctcaatgcagaaacaacag |
30612456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 10 - 243
Target Start/End: Complemental strand, 30595341 - 30595108
Alignment:
| Q |
10 |
catcatcatctccattacacatagcaatgtatccatggtttgcaatgggccaccaaactccattccttcacctagcaaacaaactagcnnnnnnnggtca |
109 |
Q |
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| T |
30595341 |
catcatcatctcctttacacatagcaatgtatccatggtttgcaatgggccaccaaactccattccttcatctagcaaacaaactagcaaaaaaaggtca |
30595242 |
T |
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| Q |
110 |
caaaatcacttttttcacacctaaatcagcacaatccaaattagaaccattcaatctctacccacaattaatcacttttatcaccatcaaagttcctcat |
209 |
Q |
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| T |
30595241 |
caaaatcacctttttcacacctaaatcagcacaatccaaattagaaccattcaatctctacccacaattaatcacttttatcaccatcaaagttcctcat |
30595142 |
T |
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| Q |
210 |
gttgaaggtctccctctcaatgcagaaacaacag |
243 |
Q |
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| T |
30595141 |
gttgaaggtctccctctcaatgcagaaacaacag |
30595108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 28 - 177
Target Start/End: Complemental strand, 30614672 - 30614523
Alignment:
| Q |
28 |
acatagcaatgtatccatggtttgcaatgggccaccaaactccattccttcacctagcaaacaaactagcnnnnnnnggtcacaaaatcacttttttcac |
127 |
Q |
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| T |
30614672 |
acatagcaatgtatccattgtttgccatgggccacctaacagcattccttcacctagcaaataagttagcaaaaaaaggccacaaaatcacattcttcac |
30614573 |
T |
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| Q |
128 |
acctaaatcagcacaatccaaattagaaccattcaatctctacccacaat |
177 |
Q |
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| T |
30614572 |
acctaaatcagcacaatccaaattagaaccattcaatctccactcacaat |
30614523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 243
Target Start/End: Complemental strand, 30614519 - 30614476
Alignment:
| Q |
200 |
agttcctcatgttgaaggtctccctctcaatgcagaaacaacag |
243 |
Q |
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| T |
30614519 |
agttcctcatgttgaaggccttcctcccaatgcagaaacaacag |
30614476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 188
Target Start/End: Original strand, 35008900 - 35009061
Alignment:
| Q |
27 |
cacatagcaatgtatccatggtttgcaatgggccaccaaactccattccttcacctagcaaacaaactagcnnnnnnnggtcacaaaatcacttttttca |
126 |
Q |
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| T |
35008900 |
cacatagcaatgtttccatggtttgcaatgggacacttaactccatatcttcatctctcaaacaaattagccaaaaggggacacaaaatctctttcttca |
35008999 |
T |
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| Q |
127 |
cacctaaatcagcacaatccaaattagaaccattcaatctctacccacaattaatcactttt |
188 |
Q |
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| T |
35009000 |
ttcccaagaaaacacaaaccaaattagaacaattcaacctttatccaaatttaatcactttt |
35009061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 35033165 - 35033237
Alignment:
| Q |
19 |
ctccattacacatagcaatgtatccatggtttgcaatgggccaccaaactccattccttcacctagcaaacaa |
91 |
Q |
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| T |
35033165 |
ctcctttacacatagcaatgtttccatggtttgctatgggacacttaactccatatcttcacctctcaaacaa |
35033237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 36288452 - 36288507
Alignment:
| Q |
27 |
cacatagcaatgtatccatggtttgcaatgggccaccaaactccattccttcacct |
82 |
Q |
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| T |
36288452 |
cacatagcaatgtctccatggtttgcaatgggacacctaattccatatcttcacct |
36288507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 35037033 - 35036963
Alignment:
| Q |
27 |
cacatagcaatgtatccatggtttgcaatgggccaccaaactccattccttcacctagcaaacaaactagc |
97 |
Q |
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||||||||||||| |||||||||||||||||| ||| |||||||| ||||| || |||||||| |||| |
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| T |
35037033 |
cacatagcaatgtttccatggtttgcaatgggacacttaactccatatcttcatctctcaaacaaattagc |
35036963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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