View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6399_low_27 (Length: 245)
Name: NF6399_low_27
Description: NF6399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6399_low_27 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 108 - 245
Target Start/End: Original strand, 26742514 - 26742651
Alignment:
| Q |
108 |
gtggtccaattagaagtagaactgtcaaattaataattgaagtgttgctatctaccactatccctttctctcttattgaatcttcatttgaatttaaact |
207 |
Q |
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| T |
26742514 |
gtggtccaattagaagtagaactgtcaaattaataattgaagtgttgctatctaccactatccctttctctcttattgaatcttcatttgaatttaaact |
26742613 |
T |
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| Q |
208 |
ttgagcaacatcaataccaaagttgaagtacttgatgc |
245 |
Q |
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| T |
26742614 |
ttgagcaacatcaataccaaagttgaagtacttgatgc |
26742651 |
T |
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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 26749629 - 26749689
Alignment:
| Q |
131 |
gtcaaattaataattgaagtgttgctatctaccactatccctttctctcttattgaatctt |
191 |
Q |
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| T |
26749629 |
gtcaaattaataatttaagtgttgctatctacaattatccctttctctcttattgaatctt |
26749689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 26741736 - 26741681
Alignment:
| Q |
129 |
ctgtcaaattaataattgaagtgttgctatctaccactatccctttctctcttatt |
184 |
Q |
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| T |
26741736 |
ctgtcaaattaatagttgaagtgttgctatctaccattctccctttctctcttatt |
26741681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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