View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6399_low_30 (Length: 238)
Name: NF6399_low_30
Description: NF6399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6399_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 53041080 - 53041301
Alignment:
| Q |
1 |
cagctcttcatacctgagttccggcaagcttgttgtcccaactaaaccaggttgggcttccaaattgagcatagtcttctccattttggccagtcacata |
100 |
Q |
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| T |
53041080 |
cagctcttcatacctgagttccggcaagcttgttgtcccaactgaaccaggttgggcttccaaattgagcatagtcttctccattttggccagtcacata |
53041179 |
T |
|
| Q |
101 |
ctgaaggtaagaatcatcacctgtagcatggtagagccaggtagctgcccacaaaagctcatccccatatccagttgagttataatatgtcgcaacttca |
200 |
Q |
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||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
53041180 |
ctgaaggtacgaatcatcacctgtggcgtggtagagccaggtagctgcccacaaaagctcatctccatatccagttgagttataatatgtcgcaacttca |
53041279 |
T |
|
| Q |
201 |
ggtatattctcactgtaaattc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
53041280 |
ggtatattctcactgtaaattc |
53041301 |
T |
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