View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6399_low_31 (Length: 234)
Name: NF6399_low_31
Description: NF6399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6399_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 6170522 - 6170309
Alignment:
| Q |
1 |
gtataaagtctgtcctacaagatgggaccaccacagtatctgcgtcaatgtcataaacgtcacgcagtaaatcgatcaatgatcatacaagccaagtaac |
100 |
Q |
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| T |
6170522 |
gtataaagtctgtcctacaagatgggaccaccacagtatctgcgtcaatgtcataaacgtcacgcagtaaatcgatctatgatcatacacgccaagtaac |
6170423 |
T |
|
| Q |
101 |
atctaccattactagtcaaacaccattttctactcatgcctttttgtttggcatgcatgcaaaagtgatgaaaacgatgtggtaactagtaaggaaaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6170422 |
atctaccattactagtcaaacaccattttctactcatgcctttttgtttggcatgcatgcaaaagtgatgaaaacgatgtggtaactagtaaggaaaata |
6170323 |
T |
|
| Q |
201 |
tttaatggatagtg |
214 |
Q |
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|||||||||||||| |
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| T |
6170322 |
tttaatggatagtg |
6170309 |
T |
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