View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6399_low_5 (Length: 496)
Name: NF6399_low_5
Description: NF6399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6399_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Complemental strand, 985190 - 984698
Alignment:
| Q |
1 |
taataattactgtttaacagatcaaacacacactacatcctagttcgcatgctactagnnnnnnnttaattagcgaaaagaaatagagatgccaaatatg |
100 |
Q |
| |
|
||||| ||||||||||| | ||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
985190 |
taatacttactgtttaataaatcaaacacaccctacatcctagttcgcatgctactagaaaaaaattaattagcgcaaagaaatagagatgccaaatatg |
985091 |
T |
|
| Q |
101 |
gagacacaattgggttttgttgtctcaaatttcaaacgttgttgcactatttatagtagttacaaatgcaaataactatggttgctaaggttataaattg |
200 |
Q |
| |
|
| ||| |||||| |||||||||||| |||||| | |||||| |||| | | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
985090 |
gcgaccaaattggtttttgttgtctctaatttccatagttgtttcactctctttagtagttacaaatgcaaataactatggttgctaaggttataaattg |
984991 |
T |
|
| Q |
201 |
ttgttgttaccagaaatattgagtaagttagtggttagaaattaannnnnnnaggaaagtagttagaagttagtttctcaatttgtatgtaaaaattgag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
984990 |
ttgttgttaccagaaatattgagtaagttagtggttagaaattaatttttttaggaaagtagttagaagttagtttctcaatttgtatgtaaaaattgag |
984891 |
T |
|
| Q |
301 |
ttctataaacatgaaaattatttacacaactcacattttataccaaataatcaacatgaactctaatgagttttttctctatcaag--ctcaagtttaat |
398 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
984890 |
ttctataaacatgaaaattatgtacacaactcacatcttataccaaataatcaacatgaactctaatgagttttttctctatcaagctctcaagtttaat |
984791 |
T |
|
| Q |
399 |
ttacctatgagacgaatcatcatttctttgatcttataatttgtaaaattggcattgttatcgttgacaagtataggacaaatgtgattgatg |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
984790 |
ttacctatgagacgaatcatcatttctttgatcttataatttgtaaaattgtcattgttatcgttgataagtataggacaaatgtgattgatg |
984698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University