View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6399_low_7 (Length: 454)
Name: NF6399_low_7
Description: NF6399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6399_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 446
Target Start/End: Complemental strand, 37147829 - 37147402
Alignment:
| Q |
19 |
agagcttcaggctatggttttcgtaatggattgataatcgctattgatttctcttaattaagagttcaacattgatttaattaattaattcacaattttg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37147829 |
agagcttcaggctatggttttcgtaatggattgataatcgctattaatttctcttaattaagagttcaacattgatttaattaattaattcacaattttg |
37147730 |
T |
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| Q |
119 |
ttttcaacttcgtccaacaaacatcccttgtaatttatcctcttcaatttcataccttttgctacacaaaatcatattcaaaacaaaaggattatcttta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
37147729 |
ttttcaacttcgtccaacaaacatcccttgtaatttatcctcttcaatttcatacctttagctacacaaaatcatattcaaaacaaaaggattatctcta |
37147630 |
T |
|
| Q |
219 |
aataaatacctctcagatnnnnnnnttgcagaaagtcagaaacattatgagtagaaaaggaatgaagaaaaaatgattatcattagttgtaactagcttt |
318 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37147629 |
aataaatacctctcagataaaaaaattgcagaaagtcagaaacattatgagtagaaaaggaatgaagaaaaaatgattatcattagttgtaactagcttt |
37147530 |
T |
|
| Q |
319 |
gtacatcaagtatttataagctatgctaactaacttgaactaacttaaaccataggattattacatcagtaactaactttctagtttacttgctatgcaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37147529 |
gtacatcaagtatttataagctatgctaactaacatgaactaacttaaaccataggattattacatcagtaactaactttctagtttacttgctatgcaa |
37147430 |
T |
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| Q |
419 |
gtcatcactatcttccttggcctttgct |
446 |
Q |
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| T |
37147429 |
gtcatcactatcttccttggcccttgct |
37147402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 36 - 167
Target Start/End: Original strand, 7894431 - 7894562
Alignment:
| Q |
36 |
ttttcgtaatggattgataatcgctattgatttctcttaattaagagttcaacattgatttaattaattaattcacaattttgttttcaacttcgtccaa |
135 |
Q |
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|||||||| | || |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||| ||||| |
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| T |
7894431 |
ttttcgtattcgactgataatcgctattgatttcccttaattaagagttcaactttgatttaattaattaattcacaatttcgttttcaatttcatccaa |
7894530 |
T |
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| Q |
136 |
caaacatcccttgtaatttatcctcttcaatt |
167 |
Q |
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| T |
7894531 |
caaacatttattgtaatttatcctcttcaatt |
7894562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 95 - 174
Target Start/End: Original strand, 35718141 - 35718220
Alignment:
| Q |
95 |
ttaattaattaattcacaattttgttttcaacttcgtccaacaaacatcccttgtaatttatcctcttcaatttcatacc |
174 |
Q |
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| T |
35718141 |
ttaattaattaatttacaatgtcgttttcaactttgtccaacaaacattctttgtaatttgtcctcttcaatttcatacc |
35718220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 35411163 - 35411082
Alignment:
| Q |
93 |
atttaattaattaattcacaattttgttttcaacttcgtccaacaaacatcccttgtaatttatcctcttcaatttcatacc |
174 |
Q |
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|||||||||||||||||||||||| ||||| || |||||||||||||||| | ||| ||||||||||||| ||||| ||||| |
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| T |
35411163 |
atttaattaattaattcacaatttcgttttgaatttcgtccaacaaacattcattgaaatttatcctctttaattttatacc |
35411082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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