View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6400_high_18 (Length: 221)
Name: NF6400_high_18
Description: NF6400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6400_high_18 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 41640884 - 41641080
Alignment:
| Q |
11 |
catcatcaaatcgtatcgtttaaaatacgtcgcatcatcattctttagtnnnnnnntatgagaaataaaggttctaaaatcgagtgatttttaaatgagg |
110 |
Q |
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| T |
41640884 |
catcatcaaatcgtatcgtttaaaatacgtcgcataatcattctttactaaaaaaatatgaaaaataaaggttctaaaatcgagtgatttttaaatgagg |
41640983 |
T |
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| Q |
111 |
aggccaatttcataaatgagtgaaaccaagagggatcaaaactctaaataaacctaaatacatccatacacaaacacaatgataagttagattttgcata |
210 |
Q |
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| T |
41640984 |
aggccaatt--------------aaacaagagggatcaaaactctaaataaacctaaatacattcatacacaaacacaatgataagttagattttgcata |
41641069 |
T |
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