View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6400_high_2 (Length: 819)
Name: NF6400_high_2
Description: NF6400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6400_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 415 - 805
Target Start/End: Complemental strand, 22193149 - 22192759
Alignment:
| Q |
415 |
ccacaaaggaatatcttcgcgtaataaaaaaccatggatctgaatattatttacacaaatttgtaagattgattttaaaatttgaaagaactaatagtat |
514 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
22193149 |
ccacaaaggaatatcttcgcataataaaaaaccatggatctgaatattatttacacaaatttgttagattgattttaaaatctgaaagaactaatagtat |
22193050 |
T |
|
| Q |
515 |
atagtaggcatgcagataaagtttaacttcactcggttatatacctaattcgtccatttagacaacaatatgataataacaaaccttcctttgaacagat |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22193049 |
atagtaggcatgcagataaagtttaacttcactcggttatatacctaattcgtccatttagacaacaatatgataataacaaaccttcctttgaacagat |
22192950 |
T |
|
| Q |
615 |
tgatatcatgaatgtcctcattgatgtacaacttagtgaaacaataagtgtttgaaacacttttttagttgaataataagtgtttgatgacaacagaaat |
714 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| | |
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| T |
22192949 |
tgatatcatgaatgccctcattgatggacaacttagtgaaacaataagtgtttgaaacacttttttagttgaataataattgtttgataacaacagaagt |
22192850 |
T |
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| Q |
715 |
caatcttaggagatacacatgcaactacaaaaacatatgtagggatatcaccttcttccttgattttggcatactttagcatcacaaccac |
805 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22192849 |
caatcttaggagatacacatgcaactacaaaaacatatgtagggatatcaccttcttccttgattttggcatactttagcatcacaaccac |
22192759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 85 - 339
Target Start/End: Complemental strand, 22193481 - 22193225
Alignment:
| Q |
85 |
atataattaaacattaacaaaacacttattgttatggaataattatatgaaatgttgtgtagactgaaaaaatcccttttagctgtaacatacaaatata |
184 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
22193481 |
atataattaaacatgaacaaaacacttactgttatggaataattaaatgaaatgttgtgtagactgaaaaaatcccttttaactataacatacaaatata |
22193382 |
T |
|
| Q |
185 |
tttaaatatctaaaaataatgcattttagatattattatatttggaagtttgactgaaaaattaaattttagttgttattgaactatccctaaacacatc |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22193381 |
tttaaatatctaaaaataatgcattttagatattattatatttggaaatttgactgaaaaattaaattttagttgttattgaattatccctaaacacatc |
22193282 |
T |
|
| Q |
285 |
taaac--aaacatttgtgtatattaaacgaaatgattttaaaaagtagacaattaat |
339 |
Q |
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| T |
22193281 |
taaacaaaaacatttgtgtatattaaacgaaatgatttaaaaaagtagacaattaat |
22193225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 85 - 230
Target Start/End: Complemental strand, 22196228 - 22196083
Alignment:
| Q |
85 |
atataattaaacattaacaaaacacttattgttatggaataattatatgaaatgttgtgtagactgaaaaaatcccttttagctgtaacatacaaatata |
184 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
22196228 |
atataattaaacatgaacaaaacacttattgttatggaataattaaacgaaatgttgtgtagactgaaaaaattccttttagctgtaacatagaaatata |
22196129 |
T |
|
| Q |
185 |
tttaaatatctaaaaataatgcattttagatattattatatttgga |
230 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
22196128 |
tttaaatatctaaaaataatgcagtttagatattattatatttgga |
22196083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 22196302 - 22196265
Alignment:
| Q |
18 |
atttggatgtatgatcgttttaaaggccctcttgatga |
55 |
Q |
| |
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|||||||||||||||||||| |||| |||||||||||| |
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| T |
22196302 |
atttggatgtatgatcgtttcaaagcccctcttgatga |
22196265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 9e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 589 - 676
Target Start/End: Original strand, 27133443 - 27133530
Alignment:
| Q |
589 |
aataacaaaccttcctttgaacagattgatatcatgaatgtcctcattgatgtacaacttagtgaaacaataagtgtttgaaacactt |
676 |
Q |
| |
|
||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||| |||||| |||||| |||||||||||| |
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| T |
27133443 |
aataacaaaccttcccttgaatagattaatctcatgaatgtcctcattgatgtacaactttgtgaaagtataagtatttgaaacactt |
27133530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 746 - 805
Target Start/End: Original strand, 27133620 - 27133679
Alignment:
| Q |
746 |
aacatatgtagggatatcaccttcttccttgattttggcatactttagcatcacaaccac |
805 |
Q |
| |
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|||| |||||||| || ||||||||||||||| |||| |||||| |||||||||||||| |
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| T |
27133620 |
aacagatgtaggggtaaaaccttcttccttgatcttggtatacttcagcatcacaaccac |
27133679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 589 - 676
Target Start/End: Complemental strand, 26410675 - 26410589
Alignment:
| Q |
589 |
aataacaaaccttcctttgaacagattgatatcatgaatgtcctcattgatgtacaacttagtgaaacaataagtgtttgaaacactt |
676 |
Q |
| |
|
||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||| |||||| |||||| |||||||||||| |
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| T |
26410675 |
aataacaaaccttcccttgaa-agattaatctcatgaatgtcctcattgatgtacaactttgtgaaagtataagtatttgaaacactt |
26410589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 746 - 805
Target Start/End: Complemental strand, 26410499 - 26410440
Alignment:
| Q |
746 |
aacatatgtagggatatcaccttcttccttgattttggcatactttagcatcacaaccac |
805 |
Q |
| |
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|||| |||||||| || ||||||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
26410499 |
aacagatgtaggggtaaaaccttcttccttgatcttggcatacttcagcatcacaaccac |
26410440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 624 - 675
Target Start/End: Original strand, 24028178 - 24028229
Alignment:
| Q |
624 |
gaatgtcctcattgatgtacaacttagtgaaacaataagtgtttgaaacact |
675 |
Q |
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||||||| |||||||| ||||||||||| || ||||||||||||||||||| |
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| T |
24028178 |
gaatgtcagcattgatgaacaacttagtgtaagaataagtgtttgaaacact |
24028229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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