View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6400_high_3 (Length: 560)
Name: NF6400_high_3
Description: NF6400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6400_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 14 - 549
Target Start/End: Complemental strand, 46069952 - 46069416
Alignment:
| Q |
14 |
cataggagactggatgactgtagggctattgctgcgagatttatgaatatgtatggctgctgtcagaatttagaagtgtctcaaattgctgctggtggtc |
113 |
Q |
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| T |
46069952 |
cataggagactggatgactgtagggctattgctgcgagatttatgaatatgtatggctgctgtcagaatttagaagtgtctcaaattgctgctggtggtc |
46069853 |
T |
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| Q |
114 |
aaattttttggtgcagtccacttgttgaaaactcttggttctggtttttgtgatgctcgattgtgatggggcggtgtgcaacttggggtataatgttgcg |
213 |
Q |
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| T |
46069852 |
aaattttttggtgcagtccacttgttgaaaactcttggttctggtttttgtgatgctcgattgtgatgggacggtgtgcaacttggggtataatgttgcg |
46069753 |
T |
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| Q |
214 |
gtcgagtgtattttgagaagctcg-attatctctttctacctggctttacaggcaatcttggttcttgctctgtcattgaggtagattgagaaaggtaat |
312 |
Q |
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| T |
46069752 |
gtcgagtgtattttgagaagctcggattatctctttctacctggctttacaggcaatcttggttcttgctctgtcattgaggtagattgagaaagttaat |
46069653 |
T |
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| Q |
313 |
aacaagacatttttggtggtttcagactttgtgtcggttgttcaacttgtgaagatggggacgaggaatcaacatcctctttaaaagtttgtatgggaaa |
412 |
Q |
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| T |
46069652 |
aacaagaaatttttggtggtttcagactttgtgtcggttgttcaacttgtgaatatggggacgaggaatcaacatcctctttacaagtttgtatgggaaa |
46069553 |
T |
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| Q |
413 |
gcttgtaggactccttgtttggaaatgagaaaaattcatcgaatccattaatttatggtaagatgattttgtaaggatgtaaaaggagagaatgaaattt |
512 |
Q |
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| T |
46069552 |
gcttgtaggactccttgtttggaaatgagaaaaattcatcgaatccattaatttatggtaagatgattttgtaaggatgtaaaaggagagaatgaaattt |
46069453 |
T |
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| Q |
513 |
ggaggttgaagtattaatgaatgagatgtaataagtg |
549 |
Q |
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| T |
46069452 |
ggagattgaagtattaatcaatgagatgtaataagtg |
46069416 |
T |
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